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The map label for this gene is yagA [C]

Identifier: 51893858

GI number: 51893858

Start: 2917660

End: 2919048

Strand: Reverse

Name: yagA [C]

Synonym: STH2720

Alternate gene names: 51893858

Gene position: 2919048-2917660 (Counterclockwise)

Preceding gene: 51893859

Following gene: 51893857

Centisome position: 81.85

GC content: 65.73

Gene sequence:

>1389_bases
ATGGACGAACAGCAGCGCGACGAGATTGCCGCTTTTCGGTGGCAGCTCATCGCACCGGTTGTGGCGGAGGATGTGACCCG
GCTCGAACGGCGGCGGATTCTGCAGCAAATCGCCCGCCAGCACCACCAGATTCCGCACAGCGACAAGACCCGGGTCAGCG
TTCGCACCTTGGAGCGTTGGATCGCCGCCTACCGGCAGGCCGGCTTCGACGGGCTGAAACCCAAGGTGCGGGACGACGCC
CGCAAGGGCCGTGTCATCACACCGGAGATTCTGGAGCACGCCATCGCTGCCAGGCGGGAAGTGCCGGAGCGCAGCGTGCA
GCAGATCATTGACACCCTGGAGAAGGCCGGCGTAGTTCCACCGGGGCTGCTCCGGCGATCCACCCTGTCGCAGCATCTGG
TGCGGGCGGGCTACAGCCGCAAGGCTATGCTCAGCCGCAAGCGCAGGGCGACCTTCCGGCGCTTTGAAGCGGCCCACCGC
AACGACTGCTGGCAGGGCGACGTGTGTCATCTCCTGAACCTGCCGCATCCGGACAGGCCCGGCAAGACCCGTAAGGTCTA
CCTCATCGCCTTCATCGACGACTACAGCCGCATCGTCTACGGGCAGATGTACTGGGAGGAGAAACTGCCCCGCCTGGAGG
ACTGCCTGAAACGCACCATCCTGCGCTACGGTCTCCCCCGTCGTATCTACGTGGACAACGGGGCGATCTATTCCGCCCGG
CACCTGGCGCGCATCTGCGGCCGACTGGGCATCCGCCTCACCCATTCCCGGCCATATCGACCGCAGGGGCGAGGGAAGAT
CGAGCGTTTCTTCCTTACCGTACAGAAGAGCTTTCTGCCGGAGGCACAGCAACTCATCGCCGCCGGCCAGCTTGCGACCC
TGGAGCAGCTCAACGAGCTGTTCTGGGCCTGGCTGGAGGTGGCGTACCACAACCGGGTGCACGGCGTGACCAAGCAGACG
CCGCGGCAGCGGTTTGAGGGCGACACGGAGCCGCTGCGGCGAATTGACCCCAGTGCACTCCGTGAGGTCTTCCTCTGGGA
GGAGGAGCGCGTGGTGGACCAGACGGGCTGCTTTTCGCTCTACCGCAACCAATACGAGGTCGACCCGGCCCTGGCCCGCC
GGAAGGTCACGCTTCGCTACGACCCGTACGACCTCAGCCAGATCCAGGTCTGGCACGAGGGGAAGCGCTTTGCCGACGCG
GTCCCGCTAAAGCTGCACCGTACCCGGCACCGGTCGGTATCCCCCGCACCCGAACCAGCTGCGGCAGCACCCAAGACCGG
CCTGAACTTCCTCACGCTGGCCAAGAAGCAGCATGACACCGAAAGGCGGAGGCGGCTGGGTGAGACCGCTTACACCCGGC
TGACGCAGCCGAAGGGGGGCCAGAACTGA

Upstream 100 bases:

>100_bases
AAGGCACGGCTTCCCTCTAGCACACCACAGAGTCTGTCCGTCGCCTTCCCGCAGGCTGGCGTGCCACAATGGCGCCAACT
TGGCAAGGGAGGGACTCACC

Downstream 100 bases:

>100_bases
GTGCTGGCCGAGTTCTTTGGCTTTCGCGTCCTGCCCTTCAGCAAGGAGATCCCGACCACCGACCTGTTTCCGTGTGCACA
GCACCAGGAGCTGCTGGCCA

Product: transposase

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MDEQQRDEIAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWIAAYRQAGFDGLKPKVRDDA
RKGRVITPEILEHAIAARREVPERSVQQIIDTLEKAGVVPPGLLRRSTLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHR
NDCWQGDVCHLLNLPHPDRPGKTRKVYLIAFIDDYSRIVYGQMYWEEKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSAR
HLARICGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQQLIAAGQLATLEQLNELFWAWLEVAYHNRVHGVTKQT
PRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYRNQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADA
VPLKLHRTRHRSVSPAPEPAAAAPKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQN

Sequences:

>Translated_462_residues
MDEQQRDEIAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWIAAYRQAGFDGLKPKVRDDA
RKGRVITPEILEHAIAARREVPERSVQQIIDTLEKAGVVPPGLLRRSTLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHR
NDCWQGDVCHLLNLPHPDRPGKTRKVYLIAFIDDYSRIVYGQMYWEEKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSAR
HLARICGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQQLIAAGQLATLEQLNELFWAWLEVAYHNRVHGVTKQT
PRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYRNQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADA
VPLKLHRTRHRSVSPAPEPAAAAPKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQN
>Mature_462_residues
MDEQQRDEIAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWIAAYRQAGFDGLKPKVRDDA
RKGRVITPEILEHAIAARREVPERSVQQIIDTLEKAGVVPPGLLRRSTLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHR
NDCWQGDVCHLLNLPHPDRPGKTRKVYLIAFIDDYSRIVYGQMYWEEKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSAR
HLARICGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQQLIAAGQLATLEQLNELFWAWLEVAYHNRVHGVTKQT
PRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYRNQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADA
VPLKLHRTRHRSVSPAPEPAAAAPKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQN

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 53977; Mature: 53977

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQQRDEIAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IAAYRQAGFDGLKPKVRDDARKGRVITPEILEHAIAARREVPERSVQQIIDTLEKAGVVP
HHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PGLLRRSTLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHRNDCWQGDVCHLLNLPHPDRP
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
GKTRKVYLIAFIDDYSRIVYGQMYWEEKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSAR
CCCEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
HLARICGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQQLIAAGQLATLEQLNEL
HHHHHHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
FWAWLEVAYHNRVHGVTKQTPRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSL
HHHHHHHHHHHHHCCCHHCCHHHHHCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHH
YRNQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADAVPLKLHRTRHRSVSPAPEPA
HHCCCCCCHHHHHCEEEEEECCCCCHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCCCC
AAAPKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDEQQRDEIAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IAAYRQAGFDGLKPKVRDDARKGRVITPEILEHAIAARREVPERSVQQIIDTLEKAGVVP
HHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PGLLRRSTLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHRNDCWQGDVCHLLNLPHPDRP
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
GKTRKVYLIAFIDDYSRIVYGQMYWEEKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSAR
CCCEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
HLARICGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQQLIAAGQLATLEQLNEL
HHHHHHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
FWAWLEVAYHNRVHGVTKQTPRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSL
HHHHHHHHHHHHHCCCHHCCHHHHHCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHH
YRNQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADAVPLKLHRTRHRSVSPAPEPA
HHCCCCCCHHHHHCEEEEEECCCCCHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCCCC
AAAPKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]