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The map label for this gene is opuCD [H]

Identifier: 51893766

GI number: 51893766

Start: 2821517

End: 2822167

Strand: Reverse

Name: opuCD [H]

Synonym: STH2628

Alternate gene names: 51893766

Gene position: 2822167-2821517 (Counterclockwise)

Preceding gene: 51893767

Following gene: 51893765

Centisome position: 79.14

GC content: 68.2

Gene sequence:

>651_bases
GTGGAACTGATGCAGGAACTGGTTGTCTACGTGAACGCACACTGGCCCAGGCTGCTGGGCCTGACCATTCAGCACGTCAA
GCTGGCCCTGCTGGCGGTCCTGTACGGGGTGCTGGTGGGCGTTCCCGTCGGCTATCTGATCAGCCGGCGACGGAAGCTGG
CGGAGCCCGTGCTCTGGGTGGCCAACGCGCTGCAGACCATCCCCGCGCTGGCGCTCATCGGCTTCGTCATGCTGTTCCTC
GGCCTCAGCCCCGCGACCGGCATCTTCTGCCTGTTCGTGTACTCGCTGATGCCGATCATCCGGTCCACCTACACCGCGCT
CATCTCCATCGACCCGGCGCTGATCGAGGCGGCCACCGGGATGGGGATGACCCGGTGGCAGATCCTGCGGATCGTCCAGC
TGCCCCTGGCCCTGGCCGTGATGATGGTGGGCATCCGGCTGGCGTTGGTGATGTCCATCGGCACGGCGTCGATCATGTCG
CTGGCCGGCGCCGGGGGGCTGGGTTCCGAGATCTTCGCCGGCATCGACCGGGTGCAGGACAAGATGATTCTCGCCGGCGC
CCTGCCCGCGGCCCTGCTGGCCATCGCCGCCGATCTGGGCATGGGCGCCCTGGAGCGGTGGCTGACGCCGAGGGGGCTGC
GACAGGCGTGA

Upstream 100 bases:

>100_bases
GGTGACGCTCATGGCCCTTCTGGCGGACTTCCTCCTGGGCCGCCTGGAGCGCCGGGTCACGCCCCGCGGGCTTCAGGTGT
AGAAAGGGGGAAGGCCCGCC

Downstream 100 bases:

>100_bases
GCCCCGGCGGAGGGAAGGGACGGTGTGGGATGGGGGCGGCGTGAACCAGGGAATGAGGAGGTTTAGATAAGGTATGTTTG
GACACCGTAGGTTCTCGGCC

Product: glycine betaine/carnitine/choline ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MELMQELVVYVNAHWPRLLGLTIQHVKLALLAVLYGVLVGVPVGYLISRRRKLAEPVLWVANALQTIPALALIGFVMLFL
GLSPATGIFCLFVYSLMPIIRSTYTALISIDPALIEAATGMGMTRWQILRIVQLPLALAVMMVGIRLALVMSIGTASIMS
LAGAGGLGSEIFAGIDRVQDKMILAGALPAALLAIAADLGMGALERWLTPRGLRQA

Sequences:

>Translated_216_residues
MELMQELVVYVNAHWPRLLGLTIQHVKLALLAVLYGVLVGVPVGYLISRRRKLAEPVLWVANALQTIPALALIGFVMLFL
GLSPATGIFCLFVYSLMPIIRSTYTALISIDPALIEAATGMGMTRWQILRIVQLPLALAVMMVGIRLALVMSIGTASIMS
LAGAGGLGSEIFAGIDRVQDKMILAGALPAALLAIAADLGMGALERWLTPRGLRQA
>Mature_216_residues
MELMQELVVYVNAHWPRLLGLTIQHVKLALLAVLYGVLVGVPVGYLISRRRKLAEPVLWVANALQTIPALALIGFVMLFL
GLSPATGIFCLFVYSLMPIIRSTYTALISIDPALIEAATGMGMTRWQILRIVQLPLALAVMMVGIRLALVMSIGTASIMS
LAGAGGLGSEIFAGIDRVQDKMILAGALPAALLAIAADLGMGALERWLTPRGLRQA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=183, Percent_Identity=34.4262295081967, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788451, Length=193, Percent_Identity=31.6062176165803, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789033, Length=182, Percent_Identity=31.8681318681319, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23101; Mature: 23101

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50928 ABC_TM1 ; PS00456 NA_SOLUT_SYMP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELMQELVVYVNAHWPRLLGLTIQHVKLALLAVLYGVLVGVPVGYLISRRRKLAEPVLWV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANALQTIPALALIGFVMLFLGLSPATGIFCLFVYSLMPIIRSTYTALISIDPALIEAATG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
MGMTRWQILRIVQLPLALAVMMVGIRLALVMSIGTASIMSLAGAGGLGSEIFAGIDRVQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KMILAGALPAALLAIAADLGMGALERWLTPRGLRQA
HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MELMQELVVYVNAHWPRLLGLTIQHVKLALLAVLYGVLVGVPVGYLISRRRKLAEPVLWV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANALQTIPALALIGFVMLFLGLSPATGIFCLFVYSLMPIIRSTYTALISIDPALIEAATG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
MGMTRWQILRIVQLPLALAVMMVGIRLALVMSIGTASIMSLAGAGGLGSEIFAGIDRVQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KMILAGALPAALLAIAADLGMGALERWLTPRGLRQA
HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]