Definition | Borrelia garinii PBi chromosome chromosome linear, complete sequence. |
---|---|
Accession | NC_006156 |
Length | 904,246 |
Click here to switch to the map view.
The map label for this gene is 51599063
Identifier: 51599063
GI number: 51599063
Start: 859396
End: 860802
Strand: Direct
Name: 51599063
Synonym: BG0837
Alternate gene names: NA
Gene position: 859396-860802 (Clockwise)
Preceding gene: 51599062
Following gene: 51599065
Centisome position: 95.04
GC content: 28.57
Gene sequence:
>1407_bases ATGAAATACTTAAATTTTTTATTTTTTTTTCTTATTTTAAATGTGTATGCTCAAAATGTCAACTCTCTAACTCCCCCCAA TCCCCCTTTGTTGCCCGAAATTACAGGAAATAGGCTTGAGATAGAAAATTCCTCTAAGGGTGAGAATTATTCTAATGTTG GTTTAGATTCCAAGTATGTTAATGATACAATTCTTTATGGACTTGATAGCCAGGTTATAAGCATTATAAAAGCTCTTAAA AAATCAAGCGACAGTCAATATAATTCTCCTCTTAAAAAAAGACTTGAGAAAACCTTTAATGCCGATATTAAAAAGGAAAT ACTTGAATTGTTTATTTCTCTTAAGTATTCAGGAGGCATTGATACAGCAAATTATATTCTTGAGAATTATGAGAGCAAAA GATATTCAAATGCTTTATTTGGCTTAGCAATTTCGTATCTTAAGGAGTTTGATGATAAGGAAAAATTAAAAAAAACTCTT ATTGAGATTCTTGAAAATAAAGAGGGCAATGTGGTATCTATTGCGGCTTATTATCTAGGGGAGCTTAATTCTCTTGAGTA TTCTAAAAATATGATAGATGTTTTTGAAAAATATTCTGGAAATGATGGTGCTAGAAGAGAAATACTTATTGCTCTTGGGA AAATGGCTGCTGTTGATTATCAGAATAGAATTTATGAAATTTCGTTAGATAGTTATGAGAGTCCATCAATTAAGGCTGCT GCTATCGAAGCGTTATCATATCTTTCTCCGGATAAAGTGACTATAAATGCTGATTTATATCTTCAGAGTAATAACAATAA TTTAAATGTTAAATTAGCTATTATTGCTTCTTTATCTAAAGATCCTTCTTTGAAGTCCAAAGAGATTTTACAAGGATTTT TAAGAGATTCTGATGATAATATTAGATTTAAAGCTATTAATGCAATTAAAGGACATAAGGATTCTTCAGCAAGGGATATT TTGATTTATAAGGTTAAAAGCGATCCATCTCTTAAAGTTAGGGAGGCTTCTGCTAAGGCTTTAATTGATATGGATCTTGG GGATATTGAAATTAAAAACATCATGTTTGATTTCAAGATTGATAATAGTTTTAAAATCTCAATGTTTATCTACCTTTTAG ATAAGGATCCTCTAAAAGCATTGTCAATTGCTTTAGAAATTGTTAACAAAGAAAATGTTAATAGACCTTCAAATGTTTTA AAAGGTATTGCTTCAATGTTGGCTGGTAAAAAGGGTAATTTTGATAATTTTTATTCTAAAATCATTGACAGTAAAAATAT TGATTTAAGGCATTTTGCATTAAAAGGAGCTATTTATAATAAATCTTCATCACTTTCTGATAAACTTAAAAAAATTAAAA GTGAAACGAACTCTGAATATATTAAAATGCTTTTAAAAGATTATTGA
Upstream 100 bases:
>100_bases TTTTAATTACGGCAGGAATTGTTAGTATTTTAACTTTATTTATTTGTTATTCTGTTTTAGGAATAAATAAACTTTTTAGG TTTATTAGGAGGGATGTTTT
Downstream 100 bases:
>100_bases TTATTAATAAACTGCTAAAACAGTCTTAGTACAAAATTTTTAAAATTTCTTTAGCTACTTCTGATTTTTTCATTTCTGGT AACTCTTTTGTGCTTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MKYLNFLFFFLILNVYAQNVNSLTPPNPPLLPEITGNRLEIENSSKGENYSNVGLDSKYVNDTILYGLDSQVISIIKALK KSSDSQYNSPLKKRLEKTFNADIKKEILELFISLKYSGGIDTANYILENYESKRYSNALFGLAISYLKEFDDKEKLKKTL IEILENKEGNVVSIAAYYLGELNSLEYSKNMIDVFEKYSGNDGARREILIALGKMAAVDYQNRIYEISLDSYESPSIKAA AIEALSYLSPDKVTINADLYLQSNNNNLNVKLAIIASLSKDPSLKSKEILQGFLRDSDDNIRFKAINAIKGHKDSSARDI LIYKVKSDPSLKVREASAKALIDMDLGDIEIKNIMFDFKIDNSFKISMFIYLLDKDPLKALSIALEIVNKENVNRPSNVL KGIASMLAGKKGNFDNFYSKIIDSKNIDLRHFALKGAIYNKSSSLSDKLKKIKSETNSEYIKMLLKDY
Sequences:
>Translated_468_residues MKYLNFLFFFLILNVYAQNVNSLTPPNPPLLPEITGNRLEIENSSKGENYSNVGLDSKYVNDTILYGLDSQVISIIKALK KSSDSQYNSPLKKRLEKTFNADIKKEILELFISLKYSGGIDTANYILENYESKRYSNALFGLAISYLKEFDDKEKLKKTL IEILENKEGNVVSIAAYYLGELNSLEYSKNMIDVFEKYSGNDGARREILIALGKMAAVDYQNRIYEISLDSYESPSIKAA AIEALSYLSPDKVTINADLYLQSNNNNLNVKLAIIASLSKDPSLKSKEILQGFLRDSDDNIRFKAINAIKGHKDSSARDI LIYKVKSDPSLKVREASAKALIDMDLGDIEIKNIMFDFKIDNSFKISMFIYLLDKDPLKALSIALEIVNKENVNRPSNVL KGIASMLAGKKGNFDNFYSKIIDSKNIDLRHFALKGAIYNKSSSLSDKLKKIKSETNSEYIKMLLKDY >Mature_468_residues MKYLNFLFFFLILNVYAQNVNSLTPPNPPLLPEITGNRLEIENSSKGENYSNVGLDSKYVNDTILYGLDSQVISIIKALK KSSDSQYNSPLKKRLEKTFNADIKKEILELFISLKYSGGIDTANYILENYESKRYSNALFGLAISYLKEFDDKEKLKKTL IEILENKEGNVVSIAAYYLGELNSLEYSKNMIDVFEKYSGNDGARREILIALGKMAAVDYQNRIYEISLDSYESPSIKAA AIEALSYLSPDKVTINADLYLQSNNNNLNVKLAIIASLSKDPSLKSKEILQGFLRDSDDNIRFKAINAIKGHKDSSARDI LIYKVKSDPSLKVREASAKALIDMDLGDIEIKNIMFDFKIDNSFKISMFIYLLDKDPLKALSIALEIVNKENVNRPSNVL KGIASMLAGKKGNFDNFYSKIIDSKNIDLRHFALKGAIYNKSSSLSDKLKKIKSETNSEYIKMLLKDY
Specific function: Unknown
COG id: COG1413
COG function: function code C; FOG: HEAT repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52859; Mature: 52859
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYLNFLFFFLILNVYAQNVNSLTPPNPPLLPEITGNRLEIENSSKGENYSNVGLDSKYV CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHC NDTILYGLDSQVISIIKALKKSSDSQYNSPLKKRLEKTFNADIKKEILELFISLKYSGGI CCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC DTANYILENYESKRYSNALFGLAISYLKEFDDKEKLKKTLIEILENKEGNVVSIAAYYLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHC ELNSLEYSKNMIDVFEKYSGNDGARREILIALGKMAAVDYQNRIYEISLDSYESPSIKAA CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH AIEALSYLSPDKVTINADLYLQSNNNNLNVKLAIIASLSKDPSLKSKEILQGFLRDSDDN HHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCC IRFKAINAIKGHKDSSARDILIYKVKSDPSLKVREASAKALIDMDLGDIEIKNIMFDFKI EEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEEEEEEEE DNSFKISMFIYLLDKDPLKALSIALEIVNKENVNRPSNVLKGIASMLAGKKGNFDNFYSK CCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH IIDSKNIDLRHFALKGAIYNKSSSLSDKLKKIKSETNSEYIKMLLKDY HHCCCCCCEEEEEEECEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure MKYLNFLFFFLILNVYAQNVNSLTPPNPPLLPEITGNRLEIENSSKGENYSNVGLDSKYV CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHC NDTILYGLDSQVISIIKALKKSSDSQYNSPLKKRLEKTFNADIKKEILELFISLKYSGGI CCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC DTANYILENYESKRYSNALFGLAISYLKEFDDKEKLKKTLIEILENKEGNVVSIAAYYLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHC ELNSLEYSKNMIDVFEKYSGNDGARREILIALGKMAAVDYQNRIYEISLDSYESPSIKAA CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH AIEALSYLSPDKVTINADLYLQSNNNNLNVKLAIIASLSKDPSLKSKEILQGFLRDSDDN HHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCC IRFKAINAIKGHKDSSARDILIYKVKSDPSLKVREASAKALIDMDLGDIEIKNIMFDFKI EEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEEEEEEEE DNSFKISMFIYLLDKDPLKALSIALEIVNKENVNRPSNVLKGIASMLAGKKGNFDNFYSK CCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH IIDSKNIDLRHFALKGAIYNKSSSLSDKLKKIKSETNSEYIKMLLKDY HHCCCCCCEEEEEEECEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA