Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 51598951

GI number: 51598951

Start: 739129

End: 739629

Strand: Direct

Name: rimM [H]

Synonym: BG0720

Alternate gene names: 51598951

Gene position: 739129-739629 (Clockwise)

Preceding gene: 51598950

Following gene: 51598952

Centisome position: 81.74

GC content: 29.34

Gene sequence:

>501_bases
ATGTTTATTAAAGGCGTAATATTATCGTCTTATGGAGTTAATGGGTATGCTAGGGTTAAAAGCATATCCAATAATTTTTG
TGATTTTATTAATCTAAAAGACAATAAAGTCCTTCTAAAAAAAAACAATGGCTTTACCATTGAAGTTAAAGTTGTAGATG
TTAATATAAAAAGCAATTCTTTATATTTGAAGTTTGAAGGGATTAATACTCCAGAGTCAGTAAAGTCTTTGATTGGTTTT
GAATTATGGGTTGATGATTCGCTTGCATCGAGTTTGAAAGAAGGTGAATATTATTTGGGTAAATTGATTGGCTATGCTAT
TGTTAACGACAACAGAAGGCTAGGAGAGGTTGTATCTTTCTTTGAATATTTAAATAGCGTATTTCTTGAGGTCAAAGTGG
GTATTAAATTTTTTTTTATTCCCTTTTTGAGCATTTATATTGGAGATATAGATGCAAGAGAAAAAACAATTGAGCTTAAG
GTTTTAGATCTTTTAAGATGA

Upstream 100 bases:

>100_bases
CGGAAGACGAGGGCGTATTGCGCGAGCTATTAGAACTTTGCTTGGAGCTTGTGCTGCTAAAACCAATAGGCGAGTGCAAT
TGGAAATTTTAGATTGATTT

Downstream 100 bases:

>100_bases
AATTTACCGTTATATCTCTTTTCCCAGCAATAATTAAACCATTTTTTGAAAATTCAATAATGAAAAAAGCTATTAACAAG
GGAATAGTAAGTTTTGAGCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNSLYLKFEGINTPESVKSLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNDNRRLGEVVSFFEYLNSVFLEVKVGIKFFFIPFLSIYIGDIDAREKTIELK
VLDLLR

Sequences:

>Translated_166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNSLYLKFEGINTPESVKSLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNDNRRLGEVVSFFEYLNSVFLEVKVGIKFFFIPFLSIYIGDIDAREKTIELK
VLDLLR
>Mature_166_residues
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNSLYLKFEGINTPESVKSLIGF
ELWVDDSLASSLKEGEYYLGKLIGYAIVNDNRRLGEVVSFFEYLNSVFLEVKVGIKFFFIPFLSIYIGDIDAREKTIELK
VLDLLR

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18873; Mature: 18873

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNS
CEEEEEEEECCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEEEEEEEEECCE
LYLKFEGINTPESVKSLIGFELWVDDSLASSLKEGEYYLGKLIGYAIVNDNRRLGEVVSF
EEEEEECCCCHHHHHHHHCEEEEECHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHH
FEYLNSVFLEVKVGIKFFFIPFLSIYIGDIDAREKTIELKVLDLLR
HHHHHHHEEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MFIKGVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNS
CEEEEEEEECCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEEEEEEEEECCE
LYLKFEGINTPESVKSLIGFELWVDDSLASSLKEGEYYLGKLIGYAIVNDNRRLGEVVSF
EEEEEECCCCHHHHHHHHCEEEEECHHHHHHHHCCHHHHHHHHEEEEECCCCHHHHHHHH
FEYLNSVFLEVKVGIKFFFIPFLSIYIGDIDAREKTIELKVLDLLR
HHHHHHHEEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA