Definition | Borrelia garinii PBi chromosome chromosome linear, complete sequence. |
---|---|
Accession | NC_006156 |
Length | 904,246 |
Click here to switch to the map view.
The map label for this gene is 51598941
Identifier: 51598941
GI number: 51598941
Start: 729656
End: 730594
Strand: Direct
Name: 51598941
Synonym: BG0709
Alternate gene names: NA
Gene position: 729656-730594 (Clockwise)
Preceding gene: 51598940
Following gene: 51598942
Centisome position: 80.69
GC content: 29.29
Gene sequence:
>939_bases ATGAAAGTAAAGTGCAAAGTTAATGCAAGCTTAGCTTTAATTAAATATTGGGGCAAGAAGGATGCTTTTTTAAACATTCC AGCGACTTCTAGTCTTGCCGTTAGTGTTGATAAATTTTATTCAATAAGTGAACTTGAACTTTCAGACCAAGATGAAATAA TTTTAAATTCAAAGCCAGTTGTATTTCAAAATAGAGAAAAGGTGTTTTTTGATTATGCAAGACAAATTCTTAGTGAACCG AATGTTAGATTTAAAATTAAAAGTGAAAACAATTTTCCAACAGCAGCAGGCCTTGCAAGTTCAAGTTCAGGTTTTGCTTC TATTGCTGCTTGCATTTTGAAATATTTTAATAAATATTCTTTTAATAGTGCATCTAATCTTGCAAGAGTAGGATCAGCTT CTGCAGCAAGGGCTGTTTATGGAGGGTTTACTATTTTGAAAGAAGGATCAAAAGAATCTTTTCAATTAAGAGATCAATCT TATTTTAATGACTTGCGCATTATATTCGCCATAATTGATAGTAATGAAAAAGAATTGTCTTCAAGAGTTGCAATGAATAT TTGTAAACACCATGAATTTTATTATGATGCTTGGATTGCTTCTAGTAAAAAGATTTTTAAAGATGCTTTATATTTTTTTT TAAAAAAAGATTTTATACGCTTTGGAGCAACTGTTGTAAAAAGTTATCAGAATATGTTTGCCTTAATGTTTGCATCTTCT ATTTTTTATTTTAAAAGTAGTACAATAGATTTAATTAAATATGCTGCTAATTTGAGAAATGAAGGAATTTTTGTATTTGA GACAATGGATGCAGGCCCCCAGGTAAAGTTTCTTTGTTTGGAGGAAAATTTAAATACTATTTTAAAAAGACTTAAACAAA ATTTTACCGACATTAATTTTATTGTTTCAAAGGTTGGGCGTGGCTTAGAATGGATTTGA
Upstream 100 bases:
>100_bases TCTAATTTCGAGAAAGACAAATTATTATTAGAAATGGAAAGAATGGATATTTATTCTTTTGATTTTGCTTTTCAAATTTT AAAGAAAATAAGGTTAGAGA
Downstream 100 bases:
>100_bases TTAGTTTTTCTGTGCCTGGAAATTTGCTTTTAATGGGGGAATATACTATTTTAGAGGAAAATGGATTGGGGTTGGCAATT GCCATCAATAAGAGAGCATT
Product: mevalonate pyrophosphate decarboxylase
Products: NA
Alternate protein names: Mevalonate Diphosphate Decarboxylase; Mevalonate Pyrophosphate Decarboxylase
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MKVKCKVNASLALIKYWGKKDAFLNIPATSSLAVSVDKFYSISELELSDQDEIILNSKPVVFQNREKVFFDYARQILSEP NVRFKIKSENNFPTAAGLASSSSGFASIAACILKYFNKYSFNSASNLARVGSASAARAVYGGFTILKEGSKESFQLRDQS YFNDLRIIFAIIDSNEKELSSRVAMNICKHHEFYYDAWIASSKKIFKDALYFFLKKDFIRFGATVVKSYQNMFALMFASS IFYFKSSTIDLIKYAANLRNEGIFVFETMDAGPQVKFLCLEENLNTILKRLKQNFTDINFIVSKVGRGLEWI
Sequences:
>Translated_312_residues MKVKCKVNASLALIKYWGKKDAFLNIPATSSLAVSVDKFYSISELELSDQDEIILNSKPVVFQNREKVFFDYARQILSEP NVRFKIKSENNFPTAAGLASSSSGFASIAACILKYFNKYSFNSASNLARVGSASAARAVYGGFTILKEGSKESFQLRDQS YFNDLRIIFAIIDSNEKELSSRVAMNICKHHEFYYDAWIASSKKIFKDALYFFLKKDFIRFGATVVKSYQNMFALMFASS IFYFKSSTIDLIKYAANLRNEGIFVFETMDAGPQVKFLCLEENLNTILKRLKQNFTDINFIVSKVGRGLEWI >Mature_312_residues MKVKCKVNASLALIKYWGKKDAFLNIPATSSLAVSVDKFYSISELELSDQDEIILNSKPVVFQNREKVFFDYARQILSEP NVRFKIKSENNFPTAAGLASSSSGFASIAACILKYFNKYSFNSASNLARVGSASAARAVYGGFTILKEGSKESFQLRDQS YFNDLRIIFAIIDSNEKELSSRVAMNICKHHEFYYDAWIASSKKIFKDALYFFLKKDFIRFGATVVKSYQNMFALMFASS IFYFKSSTIDLIKYAANLRNEGIFVFETMDAGPQVKFLCLEENLNTILKRLKQNFTDINFIVSKVGRGLEWI
Specific function: Unknown
COG id: COG3407
COG function: function code I; Mevalonate pyrophosphate decarboxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4505289, Length=208, Percent_Identity=32.2115384615385, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17537201, Length=322, Percent_Identity=25.776397515528, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324371, Length=311, Percent_Identity=28.9389067524116, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI28571205, Length=326, Percent_Identity=23.6196319018405, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35455; Mature: 35455
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVKCKVNASLALIKYWGKKDAFLNIPATSSLAVSVDKFYSISELELSDQDEIILNSKPV CEEEEEECCCEEEEEECCCCCCEEECCCCCCEEEEHHHHCCEEEECCCCCCCEEECCCCE VFQNREKVFFDYARQILSEPNVRFKIKSENNFPTAAGLASSSSGFASIAACILKYFNKYS EEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCC FNSASNLARVGSASAARAVYGGFTILKEGSKESFQLRDQSYFNDLRIIFAIIDSNEKELS CCCHHHHHHHCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCEEEEEEEECCCHHHHH SRVAMNICKHHEFYYDAWIASSKKIFKDALYFFLKKDFIRFGATVVKSYQNMFALMFASS HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFYFKSSTIDLIKYAANLRNEGIFVFETMDAGPQVKFLCLEENLNTILKRLKQNFTDINF HHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCHHHH IVSKVGRGLEWI HHHHHCCCCCCC >Mature Secondary Structure MKVKCKVNASLALIKYWGKKDAFLNIPATSSLAVSVDKFYSISELELSDQDEIILNSKPV CEEEEEECCCEEEEEECCCCCCEEECCCCCCEEEEHHHHCCEEEECCCCCCCEEECCCCE VFQNREKVFFDYARQILSEPNVRFKIKSENNFPTAAGLASSSSGFASIAACILKYFNKYS EEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCC FNSASNLARVGSASAARAVYGGFTILKEGSKESFQLRDQSYFNDLRIIFAIIDSNEKELS CCCHHHHHHHCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCEEEEEEEECCCHHHHH SRVAMNICKHHEFYYDAWIASSKKIFKDALYFFLKKDFIRFGATVVKSYQNMFALMFASS HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFYFKSSTIDLIKYAANLRNEGIFVFETMDAGPQVKFLCLEENLNTILKRLKQNFTDINF HHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCHHHH IVSKVGRGLEWI HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA