Click here to switch to the map view.

The map label for this gene is fdhE

Identifier: 51598215

GI number: 51598215

Start: 4692802

End: 4693731

Strand: Direct

Name: fdhE

Synonym: YPTB3930

Alternate gene names: 51598215

Gene position: 4692802-4693731 (Clockwise)

Preceding gene: 51598214

Following gene: 51598216

Centisome position: 98.91

GC content: 49.68

Gene sequence:

>930_bases
ATGAGTATTCGTATTGTCCCTAAAGACCAATTAGGTAAACAACGCGAAAAAGGTACAACGGCGGGGAATATCCCGCCGTT
ACTTTTCGCAAATTTAAAAAGTTTGTATACCCGACGCACTGAACGTTTGCAGCAGTTGGCGCTGGACAATCCGCTGGCCG
ATTATCTGGATTTTGCGGCCAAAATTACTGAAGCCCAGCAAAAAGCACTGCATGACCATCCGTTGGTCTTGGATATGCAA
GCCGAGTTGGTGCAATCAGCGGCCAGTGGCAAGCCCCCCTTGGACGGGAGTGTTTTTCCGCGTACCGAACATTGGCGCAA
GCTGCTATCCGCGCTGATTGCCGAATTGCGTCACGATGCTCCCGACCACATTTTGGCGGTGCTGGATAATCTCGATAAAG
CATCGGTTCATGAGCTAGAGTTGTACGCTGATGCCTTGCTAAACCGAGATTTTTCTCAAGTCGGTAGTGAGAAAGCCCCG
TTTATCTGGGCCGCTTTATCGCTCTACTGGGCGCAGATGGCCAGCCAAATCCCTGGCAAAGCACGGGCTGAATACGGTGA
ACACCGTCAGTTCTGCCCGGTGTGTGGCAGCATTCCGGTTTCCAGTGTGGTGCATATCGGCACCCATAATGGCTTGCGTT
ATTTGCACTGTAATTTGTGTGAAAGCGAATGGCATGTCGTGCGAATTAAATGCAGTAACTGTGAGCAAACCCGTGATCTT
AACTATTGGTCGTTGGACAGCGAGTTGGCCGCAGTAAAAGCAGAAAGTTGCGGTGATTGTGGTACTTACCTAAAAATTCT
TTATCAGGAAAAAGACCCGCAGGTGGAAGCGGTCGCTGATGATTTGGCCTCATTGATCCTTGATGCCAAGATGGAAGGTG
AAGGGTTCGCCCGCAGCAGTATTAATCCATTTTTGTTCCCAGGTGAGTAA

Upstream 100 bases:

>100_bases
AAAAGCACCATCCGCGTTGGTATCGTGAAGTCCGCAGTAAAGATGATGCTCGCGCCAACGCTAAAGGCCAGCCGCAAGAG
AAACAGAAAGAGAAACCCTG

Downstream 100 bases:

>100_bases
TACATAACCTTGCTACAATTTACCCTAAATAAGTCGAGTTGCAGGAAAGCCGCACTGGCGTGAGCCCCCAAAAGCCCCCA
AAAGCTTATTGATGTAAGGT

Product: formate dehydrogenase accessory protein FdhE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAAKITEAQQKALHDHPLVLDMQ
AELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDAPDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAP
FIWAALSLYWAQMASQIPGKARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDL
NYWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSSINPFLFPGE

Sequences:

>Translated_309_residues
MSIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAAKITEAQQKALHDHPLVLDMQ
AELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDAPDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAP
FIWAALSLYWAQMASQIPGKARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDL
NYWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSSINPFLFPGE
>Mature_308_residues
SIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAAKITEAQQKALHDHPLVLDMQA
ELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDAPDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAPF
IWAALSLYWAQMASQIPGKARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDLN
YWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSSINPFLFPGE

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG3058

COG function: function code O; Uncharacterized protein involved in formate dehydrogenase formation

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhE family [H]

Homologues:

Organism=Escherichia coli, GI1790324, Length=309, Percent_Identity=68.9320388349515, Blast_Score=446, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006452 [H]

Pfam domain/function: PF04216 FdhE [H]

EC number: NA

Molecular weight: Translated: 34405; Mature: 34274

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAA
CEEEECCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KITEAQQKALHDHPLVLDMQAELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDA
HHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAPFIWAALSLYWAQMASQIPGK
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
ARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDL
HHHHHCCCCCCCCCCCCCCHHHEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC
NYWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSS
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCC
INPFLFPGE
CCCCCCCCC
>Mature Secondary Structure 
SIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAA
EEEECCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KITEAQQKALHDHPLVLDMQAELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDA
HHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAPFIWAALSLYWAQMASQIPGK
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
ARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDL
HHHHHCCCCCCCCCCCCCCHHHEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC
NYWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSS
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCC
INPFLFPGE
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA