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The map label for this gene is xylA

Identifier: 51598176

GI number: 51598176

Start: 4643754

End: 4645073

Strand: Direct

Name: xylA

Synonym: YPTB3891

Alternate gene names: 51598176

Gene position: 4643754-4645073 (Clockwise)

Preceding gene: 51598169

Following gene: 51598177

Centisome position: 97.87

GC content: 48.86

Gene sequence:

>1320_bases
ATGCAATCTTATTTTAATGAATTAGAACAAGTGCGCTACGAAGGTAGCCAGAGCACGAATCCTCTGGCGTTTCATCACTA
CAACCCGGATGAAATGATCCTTGGTAAGCGAATGGCTGACCATCTGCGGTTTGCCGCCTGTTACTGGCATACCTTCTGCT
GGGGTGGGGCCGATATGTTCGGTGCCAATGCTTTTGATCGCCCATGGCAACAACCTGGGGATGCACTGGCTCTGGCTAAA
CGCAAAGCCGAGGTTGCATTTGAATTCTTCCATAAACTGAATGTACCGTATTACTGCTTCCATGATGTGGATGTCTCGCC
AGAAGGCGCGTCACTACAGGAATATCTGAATAACTTCGCCGTAATGACCGATGTACTGGCTGAAAAACAAGCAGCCAGTG
GTGTGAAATTATTATGGGGCACGGCTAACTGCTTTACCCATCCTCGTTATGGTGCTGGTGCCGCGACCAATCCTGATCCA
GAAGTATTTAGCTGGGCAGCCACCCAGGTCTTTACGGCCATGAATGCCACCCGCCAACTCGGCGGTGAAAACTATGTGTT
ATGGGGCGGACGTGAAGGCTACGAAACACTGTTGAATACCGATTTGCGACAAGAGCGTGAACAAATTGGCCGCTTTATGC
AAATGGTCGTCGAACATAAACACAAAACGGGTTTCCAGGGGACACTCCTTATTGAGCCAAAACCGCAGGAGCCCACTAAA
CATCAATACGATTATGACGTCGCGACAGTTTACGGCTTCCTTAAGCAGTTCGGCTTAGAAAAAGAGATTAAAGTCAATAT
TGAAGCCAACCATGCCACGCTGGCGGGGCACTCTTTCCATCACGAAATTGCCAGTGCCATCGCCTTAGGTATTTTTGGCT
CAGTGGATGCTAACCGGGGCGATCCGCAACTGGGCTGGGATACCGATCAATTCCCAAACAGTGTAGAAGAAAATACACTG
GTGATGTTCGAGATCCTCAAAGCAGGCGGTTTTACCACCGGGGGCCTGAATTTTGATGCCAAAGTGCGCCGCCAAAGTAC
CGATAAATATGATCTGTTCTACGGTCATATTGGCGCAATGGACACCATGGCACTGGCGCTAAAATTTGCCGCCAAAATGA
TTGAAGATGGGCAATTAGATCAGATCGTTGCCAAACGTTATGCCGGTTGGAATAGCGAGCTGGGCCAACAGATCCTGCAA
GGTAAAATGTCGCTGGAAGAGCTCTCCCGCTATGCCAGTCAACATAATCTGAACCCGCAGCACCAAAGCGGTCATCAAGA
GTTGTTGGAGAATAAGGTTAACCGCTATTTATTTGGTTGA

Upstream 100 bases:

>100_bases
CACTGAACGAAGGCCGCTAACGTATAAGCAACTTGAAGTCTCACGGGTATAAACGTTCACCAGCCCAGCAAAAGCAGGGC
CTGCTTCCAAGGAGTATTGC

Downstream 100 bases:

>100_bases
TCGTTTACTGAGTTGATCGTTTACTGGGTTGACCGCTTACTGAGCTTATACACCCTACCGGGTCGTCCTTAGAGGCGGCC
AAAATGGCGAGTAGAATAGC

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQSYFNELEQVRYEGSQSTNPLAFHHYNPDEMILGKRMADHLRFAACYWHTFCWGGADMFGANAFDRPWQQPGDALALAK
RKAEVAFEFFHKLNVPYYCFHDVDVSPEGASLQEYLNNFAVMTDVLAEKQAASGVKLLWGTANCFTHPRYGAGAATNPDP
EVFSWAATQVFTAMNATRQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKTGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTL
VMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQ
GKMSLEELSRYASQHNLNPQHQSGHQELLENKVNRYLFG

Sequences:

>Translated_439_residues
MQSYFNELEQVRYEGSQSTNPLAFHHYNPDEMILGKRMADHLRFAACYWHTFCWGGADMFGANAFDRPWQQPGDALALAK
RKAEVAFEFFHKLNVPYYCFHDVDVSPEGASLQEYLNNFAVMTDVLAEKQAASGVKLLWGTANCFTHPRYGAGAATNPDP
EVFSWAATQVFTAMNATRQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKTGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTL
VMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQ
GKMSLEELSRYASQHNLNPQHQSGHQELLENKVNRYLFG
>Mature_439_residues
MQSYFNELEQVRYEGSQSTNPLAFHHYNPDEMILGKRMADHLRFAACYWHTFCWGGADMFGANAFDRPWQQPGDALALAK
RKAEVAFEFFHKLNVPYYCFHDVDVSPEGASLQEYLNNFAVMTDVLAEKQAASGVKLLWGTANCFTHPRYGAGAATNPDP
EVFSWAATQVFTAMNATRQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKTGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTL
VMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQ
GKMSLEELSRYASQHNLNPQHQSGHQELLENKVNRYLFG

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=438, Percent_Identity=85.3881278538813, Blast_Score=806, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49550; Mature: 49550

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSYFNELEQVRYEGSQSTNPLAFHHYNPDEMILGKRMADHLRFAACYWHTFCWGGADMF
CCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHC
GANAFDRPWQQPGDALALAKRKAEVAFEFFHKLNVPYYCFHDVDVSPEGASLQEYLNNFA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
VMTDVLAEKQAASGVKLLWGTANCFTHPRYGAGAATNPDPEVFSWAATQVFTAMNATRQL
HHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKTGFQGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHH
DTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
HQSGHQELLENKVNRYLFG
CCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSYFNELEQVRYEGSQSTNPLAFHHYNPDEMILGKRMADHLRFAACYWHTFCWGGADMF
CCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHC
GANAFDRPWQQPGDALALAKRKAEVAFEFFHKLNVPYYCFHDVDVSPEGASLQEYLNNFA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
VMTDVLAEKQAASGVKLLWGTANCFTHPRYGAGAATNPDPEVFSWAATQVFTAMNATRQL
HHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKTGFQGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHH
DTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
HQSGHQELLENKVNRYLFG
CCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA