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The map label for this gene is recJ

Identifier: 51597476

GI number: 51597476

Start: 3722489

End: 3724222

Strand: Reverse

Name: recJ

Synonym: YPTB3165

Alternate gene names: 51597476

Gene position: 3724222-3722489 (Counterclockwise)

Preceding gene: 51597477

Following gene: 51597474

Centisome position: 78.49

GC content: 52.83

Gene sequence:

>1734_bases
GTGACGTTGAAAACCCAACTTCGCCGCCGTGAGGCGGCAGATGACAGCCATTTACCTGCGCAATTGCCCCCGTTACTGCG
TCGTCTCTATGCTAGCCGTGGCGTAAAGGATGCGCAGGAGTTGGAGAGGGGCGTGAAAGGCCTACTGGCATGGCAAAAAC
TGGATGGTATTGACGCTGGCGTCACCTTATTACAACAAGCCCTGGCTGATCGGCGGCGTATTGTCATTGTCGGCGATTTT
GATGCTGACGGCGCGACCAGTACCGCGTTGGCGGTGCTGGCTTTGCGCAGTATGGGCGGCAGTAACCTTGATTATCTGGT
ACCTAACCGATTTGAAGATGGTTATGGGCTTAGCCCCGAAGTGGTTGAACAAGTTGCGGCCAGAGGGGCAGAGCTGATTG
TTACTGTGGATAACGGTATTTCCTCTCATGCCGGGGTCGATCTGGCTCATGCCAAAGGTATTCAGGTTCTGGTGACGGAC
CACCATTTGCCGGGCGAAACATTACCCGCGGCGGATGCCATCATTAACCCAAATCTGGCCGGTTGCGATTTTTTATCCAA
GTCATTGGCGGGGGTCGGTGTCACTTTCTATTTGATGCTGGCGCTGCGCGCCCGTCTCAGGGAATGTGGTTGGTTTGAAC
AACGTACCTTAGCGGTTCCTAATCTGGCTGAACTGTTGGATTTGGTGGCATTGGGTACGGTGGCAGATGTGGTGCCGTTG
GATGCCAATAACCGTATTTTGGTCCATCAAGGGTTAAGTCGTATTCGTGCGGGGAAGTGCCGTCCAGGAATTCGCGCATT
ATTGGAGGTCGCTAACCGTGATGCGCGTCAACTGGTTGCGAACGATTTAGGCTTTTCTCTTGGCCCACGGTTGAATGCGG
CGGGGCGTTTAGATGATATGTCCATCGGGGTGGCGCTACTGCTGAGTGACGATATTGCTCAGGCGCGAGCACTGGCAATC
GATCTTGACACCTTGAATCAAACCCGGCGCGAGATAGAACAGGGTATGCAGGTTGAAGCTTTGCAACTGTGTGACCAGTT
GGAGCGCACCAGCAGTGAATTACCTTACGGTATCGCGATGTACCATCCAGAATGGCATCAGGGCGTTGTGGGTATTTTGG
CTTCACGCATCAAAGAACGCTTTCACCGCCCGGTTATCGCTTTTGCCCCGGCGGGAGAAGGGTTATTGAAAGGGTCGGGT
CGTAGCGTTGCGGGTTTGCATATGCGTGATGCCCTTGAGCGTCTGGACACTCTGAACCCAGGGTTAATACTGAAGTTTGG
TGGGCACGCCATGGCGGCAGGGTTATCGCTGGAGGAAGGTAAATTCGATGAATTCCGCCAGCGTTTTGCAGATTTAGTCG
GTGAATGGATGGATGCTTCGCAATTGGAAGGCGTTATTTGGTCTGATGGCGAACTGAACGGTGCTGAGTTATCACTGGAG
ACCGCAGAGCTATTGCGCGACGGTGGTCCATGGGGGCAATCTTTCCCTGAGCCGACCTTTGATGGCAAATTCCGTATCTT
ACAGCAGCGCTTAGTGGGTGAGCGTCACCTGAAACTCATGGTAGAGCCGCTGAATGGCGGGCCTTTGTTAGATGGAATTG
CCTTTAATGTCGATACCACTTTGTGGCCGGATAGCAGCGTGCGAGAAGTTAAATTGGCCTATAAACTGGATATTAATGAA
TATCGTGGTAATCGCAGTGTTCAGTTGCTGGTTCAACACTTGTGGCCTTATTAG

Upstream 100 bases:

>100_bases
GCAAAATGGCACTATTGTCCCAGGCTATCAGGGACCGAAAGAAATGCTACAGATGCTTAATGCGCATCAGGCTTCACTAA
AAGCGGGTGGTTGATTACCT

Downstream 100 bases:

>100_bases
CGCGTTAGCCGATTACTCAGCCTTCTTCCTTGCGCGGCTAACACCGTTGCAACGCCAAGGAAGAAGGGGATGGCGCTACA
AATATAATCAACCTGCTATA

Product: ssDNA exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDF
DADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTD
HHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAI
DLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSG
RSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINE
YRGNRSVQLLVQHLWPY

Sequences:

>Translated_577_residues
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDF
DADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTD
HHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAI
DLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSG
RSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINE
YRGNRSVQLLVQHLWPY
>Mature_576_residues
TLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAGVTLLQQALADRRRIVIVGDFD
ADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDH
HLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLD
ANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARALAID
LDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGR
SVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLET
AELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPDSSVREVKLAYKLDINEY
RGNRSVQLLVQHLWPY

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=576, Percent_Identity=75.1736111111111, Blast_Score=897, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 62999; Mature: 62868

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
HHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHCCCCCC
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEC
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDM
CCCCEEEHHHCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
SIGVALLLSDDIAQARALAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
HHCEEEEECHHHHHHHEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEE
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
ECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHCCCC
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
CEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCCEEEHH
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEECCEEEECCCE
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
ECCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TLKTQLRRREAADDSHLPAQLPPLLRRLYASRGVKDAQELERGVKGLLAWQKLDGIDAG
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPE
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VVEQVAARGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLA
HHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHCCCCCC
GCDFLSKSLAGVGVTFYLMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEC
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDM
CCCCEEEHHHCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
SIGVALLLSDDIAQARALAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAM
HHCEEEEECHHHHHHHEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEE
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
ECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHCCCC
GLILKFGGHAMAAGLSLEEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLE
CEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEECCCCCCCCEEEHH
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTT
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEECCEEEECCCE
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
ECCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]