| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is fdhF
Identifier: 51594750
GI number: 51594750
Start: 474164
End: 476311
Strand: Direct
Name: fdhF
Synonym: YPTB0398
Alternate gene names: 51594750
Gene position: 474164-476311 (Clockwise)
Preceding gene: 51594749
Following gene: 51594755
Centisome position: 9.99
GC content: 53.49
Gene sequence:
>2148_bases ATGAAAAAGATCCTCACGGTCTGCCCCTATTGCGGCTCGGGATGTAAGTTAAATTTATTGGTCGAAGACGGCGAGATTGT CGGTGCCGAACCCGCTGATGGTGTCACTAATCAGGGAGCGTTGTGTCTGAAAGGGTACTACGGCTGGGATTTTCTTAACG ATACCCGCTTGTTGACGCCACGGTTGACCACGCCCTTATTGCGGCGTCAGCGAGGCGAGGCGTTTCAGCCCGTGAGTTGG GAGGCGGCGATTGCGTTTATCACGGCTAAACTTAGCGCCATAAAAGAACGTCATGGGCCTGATGCCATCATGATGACGGG CTCTTCCCGTGGGCCAGGTAACGAAGCCAATTATGTGATGCAAAAATTTGCTCGTGCGGCGATCGGTACCAACAATATTG ATTGCTGCGCCCGCCTGTGCCATGGCCCGTCAGTGGCTGGATTGCAGCAAACGCTGGGTAACGGCGCGATGAGCAACTCT ATCGGTGAAATTGAGAATACTGACTGCATTTTGGTCTTTGGTTATAACGCGGCGGATTCTCACCCCATTGTTGCCAGACG TATTCTGAAAGCCAAAAATAAGGGGGCTAAACTTATTGTCTGTGATCCACGGCATATCGAAACCGCCCGTATCGCCGATC AATGGTTGCCGCTGAAAAATGGTGCCAACATGGCGCTGGTCAATGCATTTATTCATGTTCTGATTGAAGAAAAACTCTAC GACGCAAATTATGTCCGCGACCATACCCGTGGCTTTGATGAACTGAAAGCAGGCGTTGCCGCATACCGCCCAGAGGATGT TGAACCGATTACGGGGCTGTCTGCCAAAGCGGTGCGTCAGGCCATGCGCACTTATGCTGCGGCCCCTGCGGCCACCCTTC TATGGGGGATGGGCGTGACCCAATGGGGCCAGGCGGTTGATGTGGTGAAAGGGCTCTCTTCGTTAGCGTTATTAACCGGT AATCTGGGGCGACCAAATGTGGGCGTCGGGCCAGTACGAGGTCAGAATAATGTACAGGGCGCGTGTGATATGGGCGTGTT GCCGAATACCTTCCCCGGCTATGAAAAAGTGACCGACAGTGAGGCCAGAGCGCGTTTTGCTCACGCCTGGGGGGTCGCTG AACTGCCCGCGCATGTTGGGTATTCGATTACCGATGTGCCGCATAAAGTGGCAGAAGGGAAGCTTAAGGCCTACTACGTA TTTGGTGAAGATCCAATCCAGACCGAGCCAGATTTAGCGGCGATGCGTGCGGCTTTTGCCGCACTGGATCTGGTCGTGGT GCAGGATATCTTTATGACCAAAACGGCAGAACTGGCGGATGTCGTACTGCCTGCAACATCCTGGGGGGAGCATGAAGGGG TCTATACCAGTGCTGACCGGGGGTTCCAGCACTTTAATAAAGCCATTGAACCGAAAGGGGATGTGAAACCGGACTGGGAG ATTATCAGCCTGATATCAACCGCCATGGGTTACCCGATGGCATACCAAAATACGCAACAAATCTGGGATGAGATGCGTGG CCTGTGCCCGCCATTCGCTGGGGCCACCTATGATAAACTGGCAGGATTGGGCTACGTGCAATGGCCTTGCCCAACCGAAG ATCACCCTGGAACACCTTATCTCTATACCGATAACCAATTCGCGACGGCTGACGGCAAAGGTTTGCTCAGTTGCGCGCCG TGGCAGCCGCCTCATGAGCAGACCGACAGTGATTATCCTCTGGCCCTCTGTACCGTGCGTGAAGTGGGGCATTACAGTTG CCGCTCAATGACCGGTAACTGCGCCACGCTAAAAATCTTGGCGGATGAGCCGGGCTATGTGCAAATCCATCCTGAGGATG CCAGCTATTTGGGGGTTATCGATCAGGCGCTGATCTGGATTTCATCACGACGCGGGAGAGTGATCGCTCGTGCCAGCGTG ACCGAACGGGCTAATCGTGGCGCGGTGTATATGACCTATCAGTGGTGGATTGGGGCCTGTAATGAACTGACTGTGGACCA TGTTGATCCCGTGTCAAAAACACCGGAATTTAAACATTGTGCGGTTAAGGTCGAGGCGATTAGCGATCAAACTGCGGCAG AGCAATATGTTGAGCAACAATACAGCCAGTTGAAAAAACGGTTATCAGACGCCGCAGTTGTACCATGA
Upstream 100 bases:
>100_bases CCAGGGGTATTGGAAGCCCTACAGCGCGAAAAACAGTTGCGGGCCGCACGAGGCAGCGCACCGGGTATCGCCCGTTAACC TACGATCATAAGGATAAAAA
Downstream 100 bases:
>100_bases CTTGTCGTGATTGAGCGTTGATTATGCCACGGCGAGACCTACTCGCCGTGGCGACAGCTATTTATTTTGTAACCGCGGGG GTGTTTTGTAAATGCTGTAA
Product: formate dehydrogenase H
Products: NA
Alternate protein names: Formate dehydrogenase-H subunit alpha; FDH-H; Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide [H]
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MKKILTVCPYCGSGCKLNLLVEDGEIVGAEPADGVTNQGALCLKGYYGWDFLNDTRLLTPRLTTPLLRRQRGEAFQPVSW EAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVMQKFARAAIGTNNIDCCARLCHGPSVAGLQQTLGNGAMSNS IGEIENTDCILVFGYNAADSHPIVARRILKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLY DANYVRDHTRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVTQWGQAVDVVKGLSSLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDSEARARFAHAWGVAELPAHVGYSITDVPHKVAEGKLKAYYV FGEDPIQTEPDLAAMRAAFAALDLVVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWE IISLISTAMGYPMAYQNTQQIWDEMRGLCPPFAGATYDKLAGLGYVQWPCPTEDHPGTPYLYTDNQFATADGKGLLSCAP WQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCATLKILADEPGYVQIHPEDASYLGVIDQALIWISSRRGRVIARASV TERANRGAVYMTYQWWIGACNELTVDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAVVP
Sequences:
>Translated_715_residues MKKILTVCPYCGSGCKLNLLVEDGEIVGAEPADGVTNQGALCLKGYYGWDFLNDTRLLTPRLTTPLLRRQRGEAFQPVSW EAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVMQKFARAAIGTNNIDCCARLCHGPSVAGLQQTLGNGAMSNS IGEIENTDCILVFGYNAADSHPIVARRILKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLY DANYVRDHTRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVTQWGQAVDVVKGLSSLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDSEARARFAHAWGVAELPAHVGYSITDVPHKVAEGKLKAYYV FGEDPIQTEPDLAAMRAAFAALDLVVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWE IISLISTAMGYPMAYQNTQQIWDEMRGLCPPFAGATYDKLAGLGYVQWPCPTEDHPGTPYLYTDNQFATADGKGLLSCAP WQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCATLKILADEPGYVQIHPEDASYLGVIDQALIWISSRRGRVIARASV TERANRGAVYMTYQWWIGACNELTVDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAVVP >Mature_715_residues MKKILTVCPYCGSGCKLNLLVEDGEIVGAEPADGVTNQGALCLKGYYGWDFLNDTRLLTPRLTTPLLRRQRGEAFQPVSW EAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVMQKFARAAIGTNNIDCCARLCHGPSVAGLQQTLGNGAMSNS IGEIENTDCILVFGYNAADSHPIVARRILKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLY DANYVRDHTRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVTQWGQAVDVVKGLSSLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDSEARARFAHAWGVAELPAHVGYSITDVPHKVAEGKLKAYYV FGEDPIQTEPDLAAMRAAFAALDLVVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWE IISLISTAMGYPMAYQNTQQIWDEMRGLCPPFAGATYDKLAGLGYVQWPCPTEDHPGTPYLYTDNQFATADGKGLLSCAP WQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCATLKILADEPGYVQIHPEDASYLGVIDQALIWISSRRGRVIARASV TERANRGAVYMTYQWWIGACNELTVDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAVVP
Specific function: Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868721, Length=715, Percent_Identity=62.9370629370629, Blast_Score=989, Evalue=0.0, Organism=Escherichia coli, GI1788534, Length=789, Percent_Identity=24.4613434727503, Blast_Score=226, Evalue=5e-60, Organism=Escherichia coli, GI3868719, Length=621, Percent_Identity=26.8921095008052, Blast_Score=186, Evalue=4e-48, Organism=Escherichia coli, GI3868720, Length=624, Percent_Identity=27.724358974359, Blast_Score=182, Evalue=5e-47, Organism=Escherichia coli, GI1787778, Length=700, Percent_Identity=24.2857142857143, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI87081797, Length=804, Percent_Identity=24.5024875621891, Blast_Score=125, Evalue=6e-30, Organism=Escherichia coli, GI1787870, Length=786, Percent_Identity=24.3002544529262, Blast_Score=116, Evalue=6e-27, Organism=Escherichia coli, GI171474008, Length=787, Percent_Identity=24.0152477763659, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI145693196, Length=650, Percent_Identity=21.3846153846154, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1787231, Length=712, Percent_Identity=21.6292134831461, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006478 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 77899; Mature: 77899
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1 ; PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILTVCPYCGSGCKLNLLVEDGEIVGAEPADGVTNQGALCLKGYYGWDFLNDTRLLTP CCCCEEECCCCCCCCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEECC RLTTPLLRRQRGEAFQPVSWEAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVM CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH QKFARAAIGTNNIDCCARLCHGPSVAGLQQTLGNGAMSNSIGEIENTDCILVFGYNAADS HHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCCCCC HPIVARRILKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLY CHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH DANYVRDHTRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVT CCHHHHHHHCCHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCHH QWGQAVDVVKGLSSLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH EARARFAHAWGVAELPAHVGYSITDVPHKVAEGKLKAYYVFGEDPIQTEPDLAAMRAAFA HHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH ALDLVVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWE HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCHH IISLISTAMGYPMAYQNTQQIWDEMRGLCPPFAGATYDKLAGLGYVQWPCPTEDHPGTPY HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCE LYTDNQFATADGKGLLSCAPWQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCATLKIL EEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEHHHHCCHHHHCCCCCCEEEEEE ADEPGYVQIHPEDASYLGVIDQALIWISSRRGRVIARASVTERANRGAVYMTYQWWIGAC ECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCEEEEEEEEECCCC NELTVDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAVVP CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKKILTVCPYCGSGCKLNLLVEDGEIVGAEPADGVTNQGALCLKGYYGWDFLNDTRLLTP CCCCEEECCCCCCCCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEECC RLTTPLLRRQRGEAFQPVSWEAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVM CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH QKFARAAIGTNNIDCCARLCHGPSVAGLQQTLGNGAMSNSIGEIENTDCILVFGYNAADS HHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCCCCC HPIVARRILKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLY CHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH DANYVRDHTRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVT CCHHHHHHHCCHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCHH QWGQAVDVVKGLSSLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH EARARFAHAWGVAELPAHVGYSITDVPHKVAEGKLKAYYVFGEDPIQTEPDLAAMRAAFA HHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH ALDLVVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWE HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCHH IISLISTAMGYPMAYQNTQQIWDEMRGLCPPFAGATYDKLAGLGYVQWPCPTEDHPGTPY HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCE LYTDNQFATADGKGLLSCAPWQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCATLKIL EEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEHHHHCCHHHHCCCCCCEEEEEE ADEPGYVQIHPEDASYLGVIDQALIWISSRRGRVIARASVTERANRGAVYMTYQWWIGAC ECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCEEEEEEEEECCCC NELTVDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAVVP CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2941757; 8265357; 9278503; 2211698; 9036855 [H]