Click here to switch to the map view.

The map label for this gene is glnR [H]

Identifier: 50841830

GI number: 50841830

Start: 396209

End: 396922

Strand: Reverse

Name: glnR [H]

Synonym: PPA0344

Alternate gene names: 50841830

Gene position: 396922-396209 (Counterclockwise)

Preceding gene: 50841832

Following gene: 50841829

Centisome position: 15.5

GC content: 59.8

Gene sequence:

>714_bases
ATGATGGGATGCGACATCGTTGACGACATGATCTCGAACAACGCGATTTCAGCATGGGAGGGCATCCGGATGGCACGACT
GTCCTTGCTGGGTCCGTTAGATGCCCCGCTACCTCAGGCCTTGGAACTGTTACCGCACAGCATCTCTCGCTACGACGACC
TGAAGGAATGCATGTCTCATCTGGAAGGGGTCGACGTCGTGCTCGTCGACTGCCACGACGAACCGGCCAAGGCGCGCGAG
GCTTGTCTGCGGCTGTCCTGTCACGAGAGACGAGTGCCGGTCCTGCTGTTGGTCGGCTCCGACACTCTCTCGGTCATCAG
CCCCGACTGGGGAATGGACGACTTTCTGTGCGATTCGGCAACCCCATCGGAAGCCGAGACCCGGCTTCGCTGTCTGTTTA
CGATCCAGGTCACCAACCAGCTCGTGGCCGGACCGTTCACCGTCGACGAGGACGGGTACACAGCAAGTGTCGGGGACAAG
GACCTTGATCTCACCTACACCGAGTTCGAGCTGCTGAAGTACCTCGTCGGACACCCCGGTAGAGTACTTACCCGAGACCT
CCTGTTGTCAGACGTGTGGGGTTACGACTACTACGGTGGTACCCGGACCGTAGACGTCCATATCCGTCGTCTGCGCGCCA
AAGTCGGCCCAGAGTACGAAGGCCACATCCAAACGGTGCGGTCGGTGGGCTACCGATTCCAGGCGGAACGTTAA

Upstream 100 bases:

>100_bases
CCCGGACTCCTCCTCATCCGGACGGAACCACTCGTCAGGCATCCTCGTCACGACACAAATCGTAGTGCCGATATTGTGAG
ACGGCTCGGTCCCCCGTGGG

Downstream 100 bases:

>100_bases
ATTCGCTCGGACGGTAGGGCCAACTGAAAGTTGCACGCCCTGCAAGCGGGCTCCGTCCGATAGATTGAATGCAGCTGCGC
TCACCCGATGGTGAGCGGAC

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MMGCDIVDDMISNNAISAWEGIRMARLSLLGPLDAPLPQALELLPHSISRYDDLKECMSHLEGVDVVLVDCHDEPAKARE
ACLRLSCHERRVPVLLLVGSDTLSVISPDWGMDDFLCDSATPSEAETRLRCLFTIQVTNQLVAGPFTVDEDGYTASVGDK
DLDLTYTEFELLKYLVGHPGRVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVGPEYEGHIQTVRSVGYRFQAER

Sequences:

>Translated_237_residues
MMGCDIVDDMISNNAISAWEGIRMARLSLLGPLDAPLPQALELLPHSISRYDDLKECMSHLEGVDVVLVDCHDEPAKARE
ACLRLSCHERRVPVLLLVGSDTLSVISPDWGMDDFLCDSATPSEAETRLRCLFTIQVTNQLVAGPFTVDEDGYTASVGDK
DLDLTYTEFELLKYLVGHPGRVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVGPEYEGHIQTVRSVGYRFQAER
>Mature_237_residues
MMGCDIVDDMISNNAISAWEGIRMARLSLLGPLDAPLPQALELLPHSISRYDDLKECMSHLEGVDVVLVDCHDEPAKARE
ACLRLSCHERRVPVLLLVGSDTLSVISPDWGMDDFLCDSATPSEAETRLRCLFTIQVTNQLVAGPFTVDEDGYTASVGDK
DLDLTYTEFELLKYLVGHPGRVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVGPEYEGHIQTVRSVGYRFQAER

Specific function: Activates the transcription of the glnA gene [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786599, Length=160, Percent_Identity=34.375, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786784, Length=177, Percent_Identity=28.8135593220339, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788394, Length=134, Percent_Identity=37.3134328358209, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790552, Length=158, Percent_Identity=32.2784810126582, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082012, Length=151, Percent_Identity=33.112582781457, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789809, Length=167, Percent_Identity=29.940119760479, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789402, Length=172, Percent_Identity=30.8139534883721, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790860, Length=183, Percent_Identity=31.6939890710383, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI145693140, Length=160, Percent_Identity=29.375, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26531; Mature: 26531

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGCDIVDDMISNNAISAWEGIRMARLSLLGPLDAPLPQALELLPHSISRYDDLKECMSH
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LEGVDVVLVDCHDEPAKAREACLRLSCHERRVPVLLLVGSDTLSVISPDWGMDDFLCDSA
CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCHHHCCCC
TPSEAETRLRCLFTIQVTNQLVAGPFTVDEDGYTASVGDKDLDLTYTEFELLKYLVGHPG
CCCHHHCEEEEEEEEEECCHHHCCCEEECCCCCEECCCCCCCCEEHHHHHHHHHHHCCCC
RVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVGPEYEGHIQTVRSVGYRFQAER
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCC
>Mature Secondary Structure
MMGCDIVDDMISNNAISAWEGIRMARLSLLGPLDAPLPQALELLPHSISRYDDLKECMSH
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LEGVDVVLVDCHDEPAKAREACLRLSCHERRVPVLLLVGSDTLSVISPDWGMDDFLCDSA
CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCHHHCCCC
TPSEAETRLRCLFTIQVTNQLVAGPFTVDEDGYTASVGDKDLDLTYTEFELLKYLVGHPG
CCCHHHCEEEEEEEEEECCHHHCCCEEECCCCCEECCCCCCCCEEHHHHHHHHHHHCCCC
RVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVGPEYEGHIQTVRSVGYRFQAER
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7688332; 12000953 [H]