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The map label for this gene is 50841815

Identifier: 50841815

GI number: 50841815

Start: 378637

End: 380100

Strand: Direct

Name: 50841815

Synonym: PPA0329

Alternate gene names: NA

Gene position: 378637-380100 (Clockwise)

Preceding gene: 50841814

Following gene: 50841819

Centisome position: 14.79

GC content: 60.18

Gene sequence:

>1464_bases
ATGCCGGAATCTGACATGACAGGTTCCTTTTCTGAATCCCGCGACGATTGGCTTCCCCAGCTCTACCAAGAGAGGTGGGA
CGCCTTCGTGCGGTTGGCCACCTTGCTGTTGGCGGACCAGCAAGTAGCTGAGGATGCGGTGATCGCGGCCTTCGCCACAA
GTTACTTGCGTGATCCGAAACTACATTCGTATGAGCATGCCGTGTCGTATGTGCGCACTGCTGTCGTGAACAAGGCGAGG
AGCCGTCAGCCAGCTGAGCGGGATGCCACCCCACCCGAAACTCCTGAAGACCTGGCCTATTGGTGCCTGAGGGGTCTGCT
GGCTCGTCAGCGCGAGGTGCTCGTTCTTAAGTTGGCTACGCCGGACCTCTCCGACGATGACATCGCTGAGACCCTTGGCA
TGAGCGTCAGCGCAGTGCGCAATAACGAGACCAAGGGCCTTATTGCCATTGGAGAGAGGCTGCGTCCGGGATCGCAAACG
AATCCGGGCCACGCCGACCCCCGAGTCGAAGCAGTCGTGCGTTCTGCGTTAGAAACCTTCGCGGAGTCGATCCATCCGAT
GTCGCGTTATGACGCCATCATATCCCAGATCGCGTGCCGCCCCCATCGTGGCAGGCCTACCACCTGGGTGATTGTGCTCG
CCTGTGGGCTAGCCTTCCTGGTCGGTGTGCTTTTGCCGTTGCTGGGGTCGGGCAACGGCTCGACGATGGGGGATCCGGAG
GCTTTACCGTCTATCCGGACCCCAGAGTCCAGTAGTCAGTCACTGTCGACTCTGCAGACTGGTCTCGACGTGTTTTACCT
GGGTCGCGACGACGGCCTCATCCACCGTGAGCTGCGTGATCTTCCCACCTCTGGTGACCGGCTAGGAACGGCCGTCGGCG
CCGTCCTCAATGTTGCACCTCTAGACCCGAATTACACCTCGGGTTGGGCAGCTGGGCAGGTGAATCGGGCTACGGTGAAG
GGTAACCGGATCACTCTCGACCTCTCCGCCTCAGCCTTCAGTCAATTCAAGAACGGTGAGCAGGTGCAACGCGCTATTCA
GCAGCTCGTCGCCACGGCTACGGCTGCCGTCGGTGACCGTACCGGCGACAAATCAGTGCGCATCCTTGTTGACGGCTCTC
CGAATCTGCCCATTATCGGCAAGCCGGCGACGGACTTCGTCGACGAGGGGTTTGCTCGGTGCGCCCGGGTGTGGGTGGAC
TCGCCTCAAGCTGGTGCCGACATGTCGGCTGGCACGATCACCATTAGTGGTGTGGCACAGCCGACGGTATCCGTCATGAG
CTATGAAGTAAGGCCCCCTCAGAGTAGCCGGATCATCACGAGCGGACAGATCAATCTATCGGCTAACGATGGTGACAAGT
GGCGGCCGTGGCACGCCACCTTCACCATGCCGAAAGGGGAATACGACTTAATCATCCGCGAGGGAACCCACATCGCCGAC
GAGAAGGTCATCACGGCCAAGTAG

Upstream 100 bases:

>100_bases
TGGCGCGGTCGCCGGGCCGCCCTGATAGCGATCGTTGGTGCGGCCTGTTTCTGGTTTAATTTCGTCGGTGTCAATTTGAT
CTTTAACGGTCTTCACTCGT

Downstream 100 bases:

>100_bases
GTGCGTTGGCTTCAGACCTGGAGGTATTTCTCGGCTTGAGTCATCACCAGCCGCGCCGGTAGATGTGGCGCCAGCCGCGC
GACGGTGCGGTTAACGAAAC

Product: putative sigma subunit

Products: NA

Alternate protein names: Sigma Subunit; Lipoprotein LpqB GerMN Domain

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MPESDMTGSFSESRDDWLPQLYQERWDAFVRLATLLLADQQVAEDAVIAAFATSYLRDPKLHSYEHAVSYVRTAVVNKAR
SRQPAERDATPPETPEDLAYWCLRGLLARQREVLVLKLATPDLSDDDIAETLGMSVSAVRNNETKGLIAIGERLRPGSQT
NPGHADPRVEAVVRSALETFAESIHPMSRYDAIISQIACRPHRGRPTTWVIVLACGLAFLVGVLLPLLGSGNGSTMGDPE
ALPSIRTPESSSQSLSTLQTGLDVFYLGRDDGLIHRELRDLPTSGDRLGTAVGAVLNVAPLDPNYTSGWAAGQVNRATVK
GNRITLDLSASAFSQFKNGEQVQRAIQQLVATATAAVGDRTGDKSVRILVDGSPNLPIIGKPATDFVDEGFARCARVWVD
SPQAGADMSAGTITISGVAQPTVSVMSYEVRPPQSSRIITSGQINLSANDGDKWRPWHATFTMPKGEYDLIIREGTHIAD
EKVITAK

Sequences:

>Translated_487_residues
MPESDMTGSFSESRDDWLPQLYQERWDAFVRLATLLLADQQVAEDAVIAAFATSYLRDPKLHSYEHAVSYVRTAVVNKAR
SRQPAERDATPPETPEDLAYWCLRGLLARQREVLVLKLATPDLSDDDIAETLGMSVSAVRNNETKGLIAIGERLRPGSQT
NPGHADPRVEAVVRSALETFAESIHPMSRYDAIISQIACRPHRGRPTTWVIVLACGLAFLVGVLLPLLGSGNGSTMGDPE
ALPSIRTPESSSQSLSTLQTGLDVFYLGRDDGLIHRELRDLPTSGDRLGTAVGAVLNVAPLDPNYTSGWAAGQVNRATVK
GNRITLDLSASAFSQFKNGEQVQRAIQQLVATATAAVGDRTGDKSVRILVDGSPNLPIIGKPATDFVDEGFARCARVWVD
SPQAGADMSAGTITISGVAQPTVSVMSYEVRPPQSSRIITSGQINLSANDGDKWRPWHATFTMPKGEYDLIIREGTHIAD
EKVITAK
>Mature_486_residues
PESDMTGSFSESRDDWLPQLYQERWDAFVRLATLLLADQQVAEDAVIAAFATSYLRDPKLHSYEHAVSYVRTAVVNKARS
RQPAERDATPPETPEDLAYWCLRGLLARQREVLVLKLATPDLSDDDIAETLGMSVSAVRNNETKGLIAIGERLRPGSQTN
PGHADPRVEAVVRSALETFAESIHPMSRYDAIISQIACRPHRGRPTTWVIVLACGLAFLVGVLLPLLGSGNGSTMGDPEA
LPSIRTPESSSQSLSTLQTGLDVFYLGRDDGLIHRELRDLPTSGDRLGTAVGAVLNVAPLDPNYTSGWAAGQVNRATVKG
NRITLDLSASAFSQFKNGEQVQRAIQQLVATATAAVGDRTGDKSVRILVDGSPNLPIIGKPATDFVDEGFARCARVWVDS
PQAGADMSAGTITISGVAQPTVSVMSYEVRPPQSSRIITSGQINLSANDGDKWRPWHATFTMPKGEYDLIIREGTHIADE
KVITAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52710; Mature: 52579

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESDMTGSFSESRDDWLPQLYQERWDAFVRLATLLLADQQVAEDAVIAAFATSYLRDPK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LHSYEHAVSYVRTAVVNKARSRQPAERDATPPETPEDLAYWCLRGLLARQREVLVLKLAT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
PDLSDDDIAETLGMSVSAVRNNETKGLIAIGERLRPGSQTNPGHADPRVEAVVRSALETF
CCCCCHHHHHHHCCCCEECCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
AESIHPMSRYDAIISQIACRPHRGRPTTWVIVLACGLAFLVGVLLPLLGSGNGSTMGDPE
HHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ALPSIRTPESSSQSLSTLQTGLDVFYLGRDDGLIHRELRDLPTSGDRLGTAVGAVLNVAP
HCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECC
LDPNYTSGWAAGQVNRATVKGNRITLDLSASAFSQFKNGEQVQRAIQQLVATATAAVGDR
CCCCCCCCCCCCCCCEEEECCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
TGDKSVRILVDGSPNLPIIGKPATDFVDEGFARCARVWVDSPQAGADMSAGTITISGVAQ
CCCCEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
PTVSVMSYEVRPPQSSRIITSGQINLSANDGDKWRPWHATFTMPKGEYDLIIREGTHIAD
CCEEHHEEECCCCCCCEEEECCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
EKVITAK
CCEEECC
>Mature Secondary Structure 
PESDMTGSFSESRDDWLPQLYQERWDAFVRLATLLLADQQVAEDAVIAAFATSYLRDPK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LHSYEHAVSYVRTAVVNKARSRQPAERDATPPETPEDLAYWCLRGLLARQREVLVLKLAT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
PDLSDDDIAETLGMSVSAVRNNETKGLIAIGERLRPGSQTNPGHADPRVEAVVRSALETF
CCCCCHHHHHHHCCCCEECCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
AESIHPMSRYDAIISQIACRPHRGRPTTWVIVLACGLAFLVGVLLPLLGSGNGSTMGDPE
HHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ALPSIRTPESSSQSLSTLQTGLDVFYLGRDDGLIHRELRDLPTSGDRLGTAVGAVLNVAP
HCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECC
LDPNYTSGWAAGQVNRATVKGNRITLDLSASAFSQFKNGEQVQRAIQQLVATATAAVGDR
CCCCCCCCCCCCCCCEEEECCCEEEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
TGDKSVRILVDGSPNLPIIGKPATDFVDEGFARCARVWVDSPQAGADMSAGTITISGVAQ
CCCCEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
PTVSVMSYEVRPPQSSRIITSGQINLSANDGDKWRPWHATFTMPKGEYDLIIREGTHIAD
CCEEHHEEECCCCCCCEEEECCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
EKVITAK
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA