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The map label for this gene is ccsA [H]

Identifier: 50841814

GI number: 50841814

Start: 377769

End: 378650

Strand: Direct

Name: ccsA [H]

Synonym: PPA0328

Alternate gene names: 50841814

Gene position: 377769-378650 (Clockwise)

Preceding gene: 50841813

Following gene: 50841815

Centisome position: 14.76

GC content: 60.88

Gene sequence:

>882_bases
GTGAGTGTGGAGAATCTGTCTGCCGTTGGGATCGTCACCGCGGCGGTGCTCTATATGCTTGCCTTCCTCGCCCACGCCGT
GGAGTGGGCCAGTGTGCGGGGGACCGAACATCCCAGCCACGAGGAGCGTCTGCGCTCGGAAACGTGGGGTCGTATGGGGC
TCAACCTCACCGTGCTGGGTGCGGCTTGCGCAGCAATCGGTGTCGTCTGCCGTGGTATTGCTGCTCATCGGTTGCCCTGG
GGCAACATGTACGAATTCGTTACCTCGGCGCTGTTCTTCGTCGTCATCGCCTACCTTGTGCTCGTCGCCATCCACCACGT
CAGATGGATGGGTATCGCCGTCACCCTGCTGCTAGCAGTTGGTAACGGGCTGGCAGCAACGGTGTTCTACGTGGCCGTAG
CGCCGCTCGTGCCGGCTCTGCATTCCGTGTGGTTCGTTATTCACATCGTTGCCGCTTGTATCGCTGCAGCCGCCCTCAAC
GTCGGGGCTATCGCCTCAATCATGTACCTCATCGCCACGAACGCCCAGGCAAAGGCCCAACGGACCGGAGTTCTGGTGGC
AAAATTGCCTCCCCTGGAATCCATGGACGCTCTGGCATATCGCGCCCACGCGATCGGCTTCCCGATCTGGACCTTCACTA
TCGCTGCTGGTTCGGTGTGGGCTGACTACGCCTGGGGACGCTTCTGGGGATGGGATCCCAAGGAGACGTGGTCTTTGGTG
ACCTGGGTGGTCTACGCGGCTTACCTCCACGCCCGGTCCACTGCCGGATGGCGCGGTCGCCGGGCCGCCCTGATAGCGAT
CGTTGGTGCGGCCTGTTTCTGGTTTAATTTCGTCGGTGTCAATTTGATCTTTAACGGTCTTCACTCGTATGCCGGAATCT
GA

Upstream 100 bases:

>100_bases
ATCGCAGTGACTCCCGATCCGGGGCTGTGGACGACGTAAACTCTCTGCTGGCTGCACTACATGGGGATAGCATGTCTGGC
GATGTCGGGGAGGAGCACTC

Downstream 100 bases:

>100_bases
CATGACAGGTTCCTTTTCTGAATCCCGCGACGATTGGCTTCCCCAGCTCTACCAAGAGAGGTGGGACGCCTTCGTGCGGT
TGGCCACCTTGCTGTTGGCG

Product: putative cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSVENLSAVGIVTAAVLYMLAFLAHAVEWASVRGTEHPSHEERLRSETWGRMGLNLTVLGAACAAIGVVCRGIAAHRLPW
GNMYEFVTSALFFVVIAYLVLVAIHHVRWMGIAVTLLLAVGNGLAATVFYVAVAPLVPALHSVWFVIHIVAACIAAAALN
VGAIASIMYLIATNAQAKAQRTGVLVAKLPPLESMDALAYRAHAIGFPIWTFTIAAGSVWADYAWGRFWGWDPKETWSLV
TWVVYAAYLHARSTAGWRGRRAALIAIVGAACFWFNFVGVNLIFNGLHSYAGI

Sequences:

>Translated_293_residues
MSVENLSAVGIVTAAVLYMLAFLAHAVEWASVRGTEHPSHEERLRSETWGRMGLNLTVLGAACAAIGVVCRGIAAHRLPW
GNMYEFVTSALFFVVIAYLVLVAIHHVRWMGIAVTLLLAVGNGLAATVFYVAVAPLVPALHSVWFVIHIVAACIAAAALN
VGAIASIMYLIATNAQAKAQRTGVLVAKLPPLESMDALAYRAHAIGFPIWTFTIAAGSVWADYAWGRFWGWDPKETWSLV
TWVVYAAYLHARSTAGWRGRRAALIAIVGAACFWFNFVGVNLIFNGLHSYAGI
>Mature_292_residues
SVENLSAVGIVTAAVLYMLAFLAHAVEWASVRGTEHPSHEERLRSETWGRMGLNLTVLGAACAAIGVVCRGIAAHRLPWG
NMYEFVTSALFFVVIAYLVLVAIHHVRWMGIAVTLLLAVGNGLAATVFYVAVAPLVPALHSVWFVIHIVAACIAAAALNV
GAIASIMYLIATNAQAKAQRTGVLVAKLPPLESMDALAYRAHAIGFPIWTFTIAAGSVWADYAWGRFWGWDPKETWSLVT
WVVYAAYLHARSTAGWRGRRAALIAIVGAACFWFNFVGVNLIFNGLHSYAGI

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31648; Mature: 31517

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVENLSAVGIVTAAVLYMLAFLAHAVEWASVRGTEHPSHEERLRSETWGRMGLNLTVLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHH
AACAAIGVVCRGIAAHRLPWGNMYEFVTSALFFVVIAYLVLVAIHHVRWMGIAVTLLLAV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNGLAATVFYVAVAPLVPALHSVWFVIHIVAACIAAAALNVGAIASIMYLIATNAQAKAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RTGVLVAKLPPLESMDALAYRAHAIGFPIWTFTIAAGSVWADYAWGRFWGWDPKETWSLV
HCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHH
TWVVYAAYLHARSTAGWRGRRAALIAIVGAACFWFNFVGVNLIFNGLHSYAGI
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA