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The map label for this gene is agaR [H]

Identifier: 50841787

GI number: 50841787

Start: 349234

End: 350163

Strand: Reverse

Name: agaR [H]

Synonym: PPA0299

Alternate gene names: 50841787

Gene position: 350163-349234 (Counterclockwise)

Preceding gene: 50841788

Following gene: 50841786

Centisome position: 13.68

GC content: 60.54

Gene sequence:

>930_bases
TTGGACCGACCACCCAAACAGACCGAGTCCAGCAGTGATGCCGCTGGGTTATCCTTAGAGGCGGTCCTCAAATTGGATCA
GCCAAACCACGTCACCGATCAAGACACCATGAGCACAACACCCAAACAGCCGCGCACGGCGACAGCTGCCCGACGCCGAC
ACATTGTCGACCATCTGCGTTCTTTGGGGCACTCGGAGTCCATCGGAGATCTTTCCCAACTGTTCGGTGTCTCTACATCG
ACGATTCGCCGCGATGTCGATGCCCTCTCGGATGAATCCAAGATCTGGAAGATTTCCGGGGGAGACGTCATGATCCGACG
ACACGAGCCTACCTGGCACGAGAAGGAACAATGCGAGCACGTCTCCAAGGCAGCAATGGCCACATATGCCGCCAAACACC
TCGTGAACGAGAGTGACCTAGTTCTGCTCGATTCCGGAACGTCCACCGCAGCACTGGGCCGCCTTCTGTCGACTCGTAAC
GACATCACCATCCTCGTAGGCGGCCTGTCCGTGCTCCAGGCCGTGGCCGAAGGCACCGCCAACGTCATGGTGCTCGGCGG
GGCGTTAAGGCAGCACAGCGGAAGCCTTCTGGGACCGTGGGCGTCATCAAACCTGCGCAGCATCACCCCTGATGTCGCGT
TCATCGGCTGCGACGCAGTCTCTGCGACCGACGGGCTCAACTGCCCACTCCTGGAGTCCGTCGAGTTCAAACACGAAGCG
ATGACGCGGGCTCGCACGTCGTGGATCCTCGCTGATCCCACCAAGATCCTCACCACCGGTAGCGAACCATATTGGGCATC
GATACCGCCCCGGACGGGGATCGTCACCGTCCAGTCGTCGAACAGTGAGCTGAGCGAGAAGCTCGGTGCCTTCCGCCGGA
GCGGACACCACGTCATCCAAGCGCCCCTTCAGCCTGCAGACACCGACTGA

Upstream 100 bases:

>100_bases
GCCCGAGCTCGATCAGGCATCAAGGTGCCTGGAATCCTTACTCGATGACGGTTTAGTGCACCGACGAGGTAACCTTATTA
GCCTGTGACCTGAGAAATTC

Downstream 100 bases:

>100_bases
CGATCCCCTTGCTCCCAGCGGACCCTTCACCGGTCGCTGTCCCGCTAGTCCTATTATCCCGTCGTTATTTCAGCGCACGG
ACACACCACTAGATGCGCTA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDRPPKQTESSSDAAGLSLEAVLKLDQPNHVTDQDTMSTTPKQPRTATAARRRHIVDHLRSLGHSESIGDLSQLFGVSTS
TIRRDVDALSDESKIWKISGGDVMIRRHEPTWHEKEQCEHVSKAAMATYAAKHLVNESDLVLLDSGTSTAALGRLLSTRN
DITILVGGLSVLQAVAEGTANVMVLGGALRQHSGSLLGPWASSNLRSITPDVAFIGCDAVSATDGLNCPLLESVEFKHEA
MTRARTSWILADPTKILTTGSEPYWASIPPRTGIVTVQSSNSELSEKLGAFRRSGHHVIQAPLQPADTD

Sequences:

>Translated_309_residues
MDRPPKQTESSSDAAGLSLEAVLKLDQPNHVTDQDTMSTTPKQPRTATAARRRHIVDHLRSLGHSESIGDLSQLFGVSTS
TIRRDVDALSDESKIWKISGGDVMIRRHEPTWHEKEQCEHVSKAAMATYAAKHLVNESDLVLLDSGTSTAALGRLLSTRN
DITILVGGLSVLQAVAEGTANVMVLGGALRQHSGSLLGPWASSNLRSITPDVAFIGCDAVSATDGLNCPLLESVEFKHEA
MTRARTSWILADPTKILTTGSEPYWASIPPRTGIVTVQSSNSELSEKLGAFRRSGHHVIQAPLQPADTD
>Mature_309_residues
MDRPPKQTESSSDAAGLSLEAVLKLDQPNHVTDQDTMSTTPKQPRTATAARRRHIVDHLRSLGHSESIGDLSQLFGVSTS
TIRRDVDALSDESKIWKISGGDVMIRRHEPTWHEKEQCEHVSKAAMATYAAKHLVNESDLVLLDSGTSTAALGRLLSTRN
DITILVGGLSVLQAVAEGTANVMVLGGALRQHSGSLLGPWASSNLRSITPDVAFIGCDAVSATDGLNCPLLESVEFKHEA
MTRARTSWILADPTKILTTGSEPYWASIPPRTGIVTVQSSNSELSEKLGAFRRSGHHVIQAPLQPADTD

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=187, Percent_Identity=33.6898395721925, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789059, Length=220, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI226510968, Length=221, Percent_Identity=28.0542986425339, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788069, Length=199, Percent_Identity=27.1356783919598, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082344, Length=195, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 33254; Mature: 33254

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRPPKQTESSSDAAGLSLEAVLKLDQPNHVTDQDTMSTTPKQPRTATAARRRHIVDHLR
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SLGHSESIGDLSQLFGVSTSTIRRDVDALSDESKIWKISGGDVMIRRHEPTWHEKEQCEH
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHHHHHHH
VSKAAMATYAAKHLVNESDLVLLDSGTSTAALGRLLSTRNDITILVGGLSVLQAVAEGTA
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC
NVMVLGGALRQHSGSLLGPWASSNLRSITPDVAFIGCDAVSATDGLNCPLLESVEFKHEA
CEEEEECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
MTRARTSWILADPTKILTTGSEPYWASIPPRTGIVTVQSSNSELSEKLGAFRRSGHHVIQ
HHHHHHCEEEECCCEEEECCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
APLQPADTD
CCCCCCCCC
>Mature Secondary Structure
MDRPPKQTESSSDAAGLSLEAVLKLDQPNHVTDQDTMSTTPKQPRTATAARRRHIVDHLR
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SLGHSESIGDLSQLFGVSTSTIRRDVDALSDESKIWKISGGDVMIRRHEPTWHEKEQCEH
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHHHHHHH
VSKAAMATYAAKHLVNESDLVLLDSGTSTAALGRLLSTRNDITILVGGLSVLQAVAEGTA
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC
NVMVLGGALRQHSGSLLGPWASSNLRSITPDVAFIGCDAVSATDGLNCPLLESVEFKHEA
CEEEEECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
MTRARTSWILADPTKILTTGSEPYWASIPPRTGIVTVQSSNSELSEKLGAFRRSGHHVIQ
HHHHHHCEEEECCCEEEECCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
APLQPADTD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]