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The map label for this gene is yqxC [H]

Identifier: 50365145

GI number: 50365145

Start: 387258

End: 388061

Strand: Reverse

Name: yqxC [H]

Synonym: Mfl329

Alternate gene names: 50365145

Gene position: 388061-387258 (Counterclockwise)

Preceding gene: 50365146

Following gene: 50365144

Centisome position: 48.92

GC content: 24.0

Gene sequence:

>804_bases
ATGAAAAAGCGTTTAGATGAAGTTCTTGTAGAAAAAGCATTAGTTTCTACAAGAAGTAAGGCAAAAGAACAAATAGTTAA
TAGAAAAGAAGTATATGTAAATAATGTTTTAATTACAAAAGCTGGTTTTATGGTTAGTGAAACTGATTTAATCGATATTA
GATTGAAGCAAAGTACTTTTGTTTCAAGAGCTGGTTTAAAATTAGAAAAAACTATTAAGGATTGAAAAATTGATTTAAAC
AATAAAGTATGTTTAGATATTGGTGCTTCAACTGGTGGTTTTACACAAGTATGTTTAGAAAATAATGCAAGTTTAGTTTA
TGCAGTTGATGTAGGTACTGATCAATTAGATGAATCTTTAAAAAATAATAAATTAGTCAAAGATATGCAAAAATATAATT
TTAGATATGCAAAAAAAGAAGACTTTGATAAAAATATAGAATTCTTTTGTTGCGATGTAAGTTTTATTTCATTAGATAAA
ATTTTACCAACTTTAAACAATTTAATTCAAGAGCAAACAAGTGGTGTTGTATTAATCAAACCTGAGTTTGAAGCAGGTAG
TGAATTAGCTAAAAATGGTAAAGTTAATTTAAAATCAACACATTTACAAGTTATTAAAAATTTTATATATTATTCTAAAG
AAAATGGTTTCTCTGTTGATAGATTAACTTATTCACCAATAGTTGGTAATAAGAAACAAAATATTGAATATTTAGCTTAT
TTAACAAAAACAGAAAAACAAAAGAATTGAAAAGATGAAGAACTAAACAAAGTTGTTAATCAATCTTGAAAATACTTAAC
ATAA

Upstream 100 bases:

>100_bases
AAAACATTAAAAGAATTCAATTAGCAAAAGAAAAGCTAACTGAATACAAAGGCACTATTAACAAAGTTTTAGCAGAAAAT
AAAATCGAAGAATTTAATTA

Downstream 100 bases:

>100_bases
AAAGGAGGCATCCACATGAATCAAAAAGTAATTTTGCATCTTGATATGGATGCTTTTTTTGCAAGTTGTGAGCAAGCTCA
TGATAAGACTTTAAAAAATA

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKKRLDEVLVEKALVSTRSKAKEQIVNRKEVYVNNVLITKAGFMVSETDLIDIRLKQSTFVSRAGLKLEKTIKDWKIDLN
NKVCLDIGASTGGFTQVCLENNASLVYAVDVGTDQLDESLKNNKLVKDMQKYNFRYAKKEDFDKNIEFFCCDVSFISLDK
ILPTLNNLIQEQTSGVVLIKPEFEAGSELAKNGKVNLKSTHLQVIKNFIYYSKENGFSVDRLTYSPIVGNKKQNIEYLAY
LTKTEKQKNWKDEELNKVVNQSWKYLT

Sequences:

>Translated_267_residues
MKKRLDEVLVEKALVSTRSKAKEQIVNRKEVYVNNVLITKAGFMVSETDLIDIRLKQSTFVSRAGLKLEKTIKD*KIDLN
NKVCLDIGASTGGFTQVCLENNASLVYAVDVGTDQLDESLKNNKLVKDMQKYNFRYAKKEDFDKNIEFFCCDVSFISLDK
ILPTLNNLIQEQTSGVVLIKPEFEAGSELAKNGKVNLKSTHLQVIKNFIYYSKENGFSVDRLTYSPIVGNKKQNIEYLAY
LTKTEKQKN*KDEELNKVVNQS*KYLT
>Mature_267_residues
MKKRLDEVLVEKALVSTRSKAKEQIVNRKEVYVNNVLITKAGFMVSETDLIDIRLKQSTFVSRAGLKLEKTIKD*KIDLN
NKVCLDIGASTGGFTQVCLENNASLVYAVDVGTDQLDESLKNNKLVKDMQKYNFRYAKKEDFDKNIEFFCCDVSFISLDK
ILPTLNNLIQEQTSGVVLIKPEFEAGSELAKNGKVNLKSTHLQVIKNFIYYSKENGFSVDRLTYSPIVGNKKQNIEYLAY
LTKTEKQKN*KDEELNKVVNQS*KYLT

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30008; Mature: 30008

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRLDEVLVEKALVSTRSKAKEQIVNRKEVYVNNVLITKAGFMVSETDLIDIRLKQSTF
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCCEEECCCEEEEEECCHHH
VSRAGLKLEKTIKDKIDLNNKVCLDIGASTGGFTQVCLENNASLVYAVDVGTDQLDESLK
HHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
NNKLVKDMQKYNFRYAKKEDFDKNIEFFCCDVSFISLDKILPTLNNLIQEQTSGVVLIKP
CCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEC
EFEAGSELAKNGKVNLKSTHLQVIKNFIYYSKENGFSVDRLTYSPIVGNKKQNIEYLAYL
CCCCCHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
TKTEKQKNKDEELNKVVNQSKYLT
HHHHHHCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKRLDEVLVEKALVSTRSKAKEQIVNRKEVYVNNVLITKAGFMVSETDLIDIRLKQSTF
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCCEEECCCEEEEEECCHHH
VSRAGLKLEKTIKDKIDLNNKVCLDIGASTGGFTQVCLENNASLVYAVDVGTDQLDESLK
HHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
NNKLVKDMQKYNFRYAKKEDFDKNIEFFCCDVSFISLDKILPTLNNLIQEQTSGVVLIKP
CCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEC
EFEAGSELAKNGKVNLKSTHLQVIKNFIYYSKENGFSVDRLTYSPIVGNKKQNIEYLAYL
CCCCCHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
TKTEKQKNKDEELNKVVNQSKYLT
HHHHHHCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]