Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 50365065

GI number: 50365065

Start: 279500

End: 279928

Strand: Direct

Name: nifU [H]

Synonym: Mfl249

Alternate gene names: 50365065

Gene position: 279500-279928 (Clockwise)

Preceding gene: 50365064

Following gene: 50365066

Centisome position: 35.24

GC content: 22.38

Gene sequence:

>429_bases
ATGATAGATATAAGTGATGATATTTTATTAAGAAAAATTTTAATGAAACATTTTACTGAGCCTGAAAATTTGGGATTAAA
AAATATTACAAATGCAATTATTAAAGATGCTAAATCTCAAACTTGTGCAGATGAAATGAAAATTGAAATATTACTTGAAA
ATAACATTTTTAAAGAAATAAATTTTGAAGGAACTGCATGTGCAGTTGCAACATCTAGTGCTGATATTTTCATTAATTTA
ATAAAAAATAAGTCTTTAGAGGATACAAAAAAAATAATAGATCAATATCAAAATTTTTTAAATACTGGTAATCTATCTGA
AATTGATCTTTTAGAAGATTTAGTAGTTTTTAAAAACATTAATAAGCAAAAAAATCGCATATTATGTGCTAATTTAGCAA
TTGAAGCCATAAATGAGATTATTGAATAG

Upstream 100 bases:

>100_bases
TAGTTTTGGAATCAATAATAATAAAGCTGAAATTGATCAATTTATAGAAGCTTTAAAAGATACAAATAGTTTCTTAGATG
TGCTATTTTAAAGGAGAAAA

Downstream 100 bases:

>100_bases
TTTGTTTATGTATAATTATATTATGTAATAATAAATTATATTTTTAAAGGAGAAACAATGAGCAACAAGAATCAAATAAG
AGAAAAATTTCTTAAAACAA

Product: nifU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIDISDDILLRKILMKHFTEPENLGLKNITNAIIKDAKSQTCADEMKIEILLENNIFKEINFEGTACAVATSSADIFINL
IKNKSLEDTKKIIDQYQNFLNTGNLSEIDLLEDLVVFKNINKQKNRILCANLAIEAINEIIE

Sequences:

>Translated_142_residues
MIDISDDILLRKILMKHFTEPENLGLKNITNAIIKDAKSQTCADEMKIEILLENNIFKEINFEGTACAVATSSADIFINL
IKNKSLEDTKKIIDQYQNFLNTGNLSEIDLLEDLVVFKNINKQKNRILCANLAIEAINEIIE
>Mature_142_residues
MIDISDDILLRKILMKHFTEPENLGLKNITNAIIKDAKSQTCADEMKIEILLENNIFKEINFEGTACAVATSSADIFINL
IKNKSLEDTKKIIDQYQNFLNTGNLSEIDLLEDLVVFKNINKQKNRILCANLAIEAINEIIE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16099; Mature: 16099

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDISDDILLRKILMKHFTEPENLGLKNITNAIIKDAKSQTCADEMKIEILLENNIFKEI
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHHC
NFEGTACAVATSSADIFINLIKNKSLEDTKKIIDQYQNFLNTGNLSEIDLLEDLVVFKNI
CCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
NKQKNRILCANLAIEAINEIIE
CCHHCEEHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIDISDDILLRKILMKHFTEPENLGLKNITNAIIKDAKSQTCADEMKIEILLENNIFKEI
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHHC
NFEGTACAVATSSADIFINLIKNKSLEDTKKIIDQYQNFLNTGNLSEIDLLEDLVVFKNI
CCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
NKQKNRILCANLAIEAINEIIE
CCHHCEEHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]