Click here to switch to the map view.

The map label for this gene is yhaM [H]

Identifier: 50365060

GI number: 50365060

Start: 271738

End: 272718

Strand: Direct

Name: yhaM [H]

Synonym: Mfl244

Alternate gene names: 50365060

Gene position: 271738-272718 (Clockwise)

Preceding gene: 50365059

Following gene: 50365064

Centisome position: 34.26

GC content: 25.99

Gene sequence:

>981_bases
ATGAGAAAAATAAATGAATTAAACAATACAATTTCTTCAACTGATTTAGTTGTTAGAATTGAAAAAGTTATTATTTCAAC
AGCTACTAATGGTTCATCTTATATCATTTTAAATTTATCAGATAAAACTGGTAGAATTGAAGCTAGAAAATGAACAGTAA
CTGAAGAAGATAAACAATTGTTACAACCAAATGCTTTTATTTTATTTAAGAATGCTGCTGTTAACGAATTTAGAGGCGTA
TTACAGCTTAAAGTTAGTGATTACAGTGTTCTTAGCGAGAATGATTTAAATAGCTATGGTTTAGATGTTAAAGACTTTTT
TATAGAAGCCCCTATTAACATCGAAAAAAACTATGGAGAATTAATGTCAATTCTTGAAAGCTTAACAAATCAAACATATA
AAGAATTAACAATTGGTTTAATCAAAAAATATGAAAAAGAGTTTTTAACTTATCCAGCTGCAATGTCAATTCATCATAAT
GTAAAAGGTGGTTTATTCTGACATAGTTTTACATTAGTTAAAAATGCTTTAGCTTTAAAACCAAGTTATGCATATGCTTC
AATTGATTGAGAATTATTGATTTGTGGAGCTATTTTACATGATATAGGTAAAGTTATAGAAATTATAGATCCAACAGGAA
CTGATTATAGTTTACAAGGTAAAATAATTGGTCATATTAGTATTGGTAACACTGAATTAAATAAAATAGCTGAAGAGTTA
AACTTATATAAAGATGAGCAAGGGAACATTAATGAATCATTAACTTTATTACAACATATGATTATTGCTAGTCATGGTAA
AAAAGAATATGGTTCACCAACTGAACCAGTTATTATTGAAGCTATTATGTTATCTATGTTTGATGATTTAGACGCAAAAG
TATTTAAAATAAATGATGAACTAAATAAAGTTGAATTAAAAACATGAACACCAAGAATCATTAGTGTGGATGGAAAAATG
TTTTATAAACATAAAAAGTAA

Upstream 100 bases:

>100_bases
TTCAAAACCTTTCTCAACAATAAATACAATTTTAGTTAATAATTCTTTAGAACCAATTGATTGGTCTAAATAAGGTAAAA
TAATAAATAAGGAGTTACAT

Downstream 100 bases:

>100_bases
TGTAATGTAACTTAGGTTACATTTTTTTATGTCAAATTATTAGGTATTAAAGTAATAAAAAAGATGACTTTTAAAGCCAT
CTTTTATTTTGTTATTTCAT

Product: cmp-binding factor-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRKINELNNTISSTDLVVRIEKVIISTATNGSSYIILNLSDKTGRIEARKWTVTEEDKQLLQPNAFILFKNAAVNEFRGV
LQLKVSDYSVLSENDLNSYGLDVKDFFIEAPINIEKNYGELMSILESLTNQTYKELTIGLIKKYEKEFLTYPAAMSIHHN
VKGGLFWHSFTLVKNALALKPSYAYASIDWELLICGAILHDIGKVIEIIDPTGTDYSLQGKIIGHISIGNTELNKIAEEL
NLYKDEQGNINESLTLLQHMIIASHGKKEYGSPTEPVIIEAIMLSMFDDLDAKVFKINDELNKVELKTWTPRIISVDGKM
FYKHKK

Sequences:

>Translated_326_residues
MRKINELNNTISSTDLVVRIEKVIISTATNGSSYIILNLSDKTGRIEARK*TVTEEDKQLLQPNAFILFKNAAVNEFRGV
LQLKVSDYSVLSENDLNSYGLDVKDFFIEAPINIEKNYGELMSILESLTNQTYKELTIGLIKKYEKEFLTYPAAMSIHHN
VKGGLF*HSFTLVKNALALKPSYAYASID*ELLICGAILHDIGKVIEIIDPTGTDYSLQGKIIGHISIGNTELNKIAEEL
NLYKDEQGNINESLTLLQHMIIASHGKKEYGSPTEPVIIEAIMLSMFDDLDAKVFKINDELNKVELKT*TPRIISVDGKM
FYKHKK
>Mature_326_residues
MRKINELNNTISSTDLVVRIEKVIISTATNGSSYIILNLSDKTGRIEARK*TVTEEDKQLLQPNAFILFKNAAVNEFRGV
LQLKVSDYSVLSENDLNSYGLDVKDFFIEAPINIEKNYGELMSILESLTNQTYKELTIGLIKKYEKEFLTYPAAMSIHHN
VKGGLF*HSFTLVKNALALKPSYAYASID*ELLICGAILHDIGKVIEIIDPTGTDYSLQGKIIGHISIGNTELNKIAEEL
NLYKDEQGNINESLTLLQHMIIASHGKKEYGSPTEPVIIEAIMLSMFDDLDAKVFKINDELNKVELKT*TPRIISVDGKM
FYKHKK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36091; Mature: 36091

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKINELNNTISSTDLVVRIEKVIISTATNGSSYIILNLSDKTGRIEARKTVTEEDKQLL
CCCHHHHHCCCCCCHHHEEEEEHEEEECCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHH
QPNAFILFKNAAVNEFRGVLQLKVSDYSVLSENDLNSYGLDVKDFFIEAPINIEKNYGEL
CCCEEEEEECCCHHHHCCEEEEEECCEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHH
MSILESLTNQTYKELTIGLIKKYEKEFLTYPAAMSIHHNVKGGLFHSFTLVKNALALKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
YAYASIDELLICGAILHDIGKVIEIIDPTGTDYSLQGKIIGHISIGNTELNKIAEELNLY
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECEEEEEEEECCHHHHHHHHHHHCC
KDEQGNINESLTLLQHMIIASHGKKEYGSPTEPVIIEAIMLSMFDDLDAKVFKINDELNK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCE
VELKTTPRIISVDGKMFYKHKK
EEEECCCEEEEECCEEEEECCC
>Mature Secondary Structure
MRKINELNNTISSTDLVVRIEKVIISTATNGSSYIILNLSDKTGRIEARKTVTEEDKQLL
CCCHHHHHCCCCCCHHHEEEEEHEEEECCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHH
QPNAFILFKNAAVNEFRGVLQLKVSDYSVLSENDLNSYGLDVKDFFIEAPINIEKNYGEL
CCCEEEEEECCCHHHHCCEEEEEECCEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHH
MSILESLTNQTYKELTIGLIKKYEKEFLTYPAAMSIHHNVKGGLFHSFTLVKNALALKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
YAYASIDELLICGAILHDIGKVIEIIDPTGTDYSLQGKIIGHISIGNTELNKIAEELNLY
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECEEEEEEEECCHHHHHHHHHHHCC
KDEQGNINESLTLLQHMIIASHGKKEYGSPTEPVIIEAIMLSMFDDLDAKVFKINDELNK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCE
VELKTTPRIISVDGKMFYKHKK
EEEECCCEEEEECCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA