BacMap

Definition	Mesoplasma florum L1, complete genome.
Accession	NC_006055
Length	793,224

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The map label for this gene is yusZ [H]

Identifier: 50364989

GI number: 50364989

Start: 201851

End: 202687

Strand: Direct

Name: yusZ [H]

Synonym: Mfl173

Alternate gene names: 50364989

Gene position: 201851-202687 (Clockwise)

Preceding gene: 50364988

Following gene: 50364990

Centisome position: 25.45

GC content: 30.7

Gene sequence:

>837_bases
ATGAAAAACAAAGTATGATTTATTACTGGAGCAAGCCAAGGGTTTGGTTTAGGGATAACAAAAAAACTTTTAGAGCAAGG
ACATCAAGTTGCAGCTACAACTAGAAATCCCCAAAAACTAGTTGATGAATTAGGCGCAAATAAAAATTTACTTGCTTTAA
AAGTAGATCTTTCAAATCAAAAAGAAATAGATGATGCAGTGGCAAAAACTGTATCAACATTCGGGTCAATTGACATTTTA
TTAAATAATGCCGGTTATGGTCAATTATGAACTTTTGAAGAATCAACAGATAAACAAATAAGAGAATGTTTCGAAGTAAA
TTTCTTTGGAACAATTAATGTAACTCGTTCAGTTTTACCAGTAATGCGTAAACAAAAATATGGACATATATTTACAACTT
CATCAATTTGAGGATATGTAGGTGTTCCTTATAATAGTACTTATGCAGCTGTTAAGTTTGCAACTGATGGTTGAACTGAA
TCAATCAGTCACGAATTAAAACCATTTGGTATAACAGTTTCATGTATCAAACCAGGAGGATTTAGAACAAACTTCTTAAG
TTCAGGATCTTTAATTACTGGTGAAGAAACAATTTCAGACTATAAATCAGGAAGAGATGAATGATTTACTAACTTAGCTT
CTTTTGATAAGCAACAAGATGGAGATCCTGAAAGATATTGTGATTTTATAATCGATATTACTAAAGGTGATAAAGTACCT
CCAGTTCACATTTTCACAGGAAGAGATTCTTATGAATATGCTGAAAATAAAATAAAACAAATCAAAGAAGATATGGAAAT
TCTTAAAACTGAAGCAACTGATTTACACGTAAGATAA

Upstream 100 bases:

>100_bases
TTGCTAAAAACAAAATTTCAGCAGTTCAAAAAGATATGGATACTTTAGAAGCACAAGCAACAAACTTACATTTTGAAAAT
TAATTAAGGATATATAAAAA

Downstream 100 bases:

>100_bases
AACTAACCAACTATGTTGGTTTTTTTATTATTTATTTCCACATTTATTGCAAAAAGATAAAGCAATAAAAAAGGATGTTT
AGTATAATTAGTAGGTATTC

Product: dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKNKVWFITGASQGFGLGITKKLLEQGHQVAATTRNPQKLVDELGANKNLLALKVDLSNQKEIDDAVAKTVSTFGSIDIL
LNNAGYGQLWTFEESTDKQIRECFEVNFFGTINVTRSVLPVMRKQKYGHIFTTSSIWGYVGVPYNSTYAAVKFATDGWTE
SISHELKPFGITVSCIKPGGFRTNFLSSGSLITGEETISDYKSGRDEWFTNLASFDKQQDGDPERYCDFIIDITKGDKVP
PVHIFTGRDSYEYAENKIKQIKEDMEILKTEATDLHVR

Sequences:

>Translated_278_residues
MKNKV*FITGASQGFGLGITKKLLEQGHQVAATTRNPQKLVDELGANKNLLALKVDLSNQKEIDDAVAKTVSTFGSIDIL
LNNAGYGQL*TFEESTDKQIRECFEVNFFGTINVTRSVLPVMRKQKYGHIFTTSSI*GYVGVPYNSTYAAVKFATDG*TE
SISHELKPFGITVSCIKPGGFRTNFLSSGSLITGEETISDYKSGRDE*FTNLASFDKQQDGDPERYCDFIIDITKGDKVP
PVHIFTGRDSYEYAENKIKQIKEDMEILKTEATDLHVR
>Mature_278_residues
MKNKV*FITGASQGFGLGITKKLLEQGHQVAATTRNPQKLVDELGANKNLLALKVDLSNQKEIDDAVAKTVSTFGSIDIL
LNNAGYGQL*TFEESTDKQIRECFEVNFFGTINVTRSVLPVMRKQKYGHIFTTSSI*GYVGVPYNSTYAAVKFATDG*TE
SISHELKPFGITVSCIKPGGFRTNFLSSGSLITGEETISDYKSGRDE*FTNLASFDKQQDGDPERYCDFIIDITKGDKVP
PVHIFTGRDSYEYAENKIKQIKEDMEILKTEATDLHVR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=189, Percent_Identity=34.9206349206349, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=34.1968911917098, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=32.8205128205128, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=34.9206349206349, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=32.6424870466321, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=30.6603773584906, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504503, Length=196, Percent_Identity=33.6734693877551, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI40548397, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI214010158, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI214010156, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI22758144, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI59889578, Length=134, Percent_Identity=31.3432835820896, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923817, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI109715829, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680136, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680133, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI17738292, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=25.8241758241758, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI22507405, Length=191, Percent_Identity=31.9371727748691, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI32483357, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI210032112, Length=119, Percent_Identity=36.1344537815126, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40254986, Length=140, Percent_Identity=33.5714285714286, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=33.8709677419355, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=34.0659340659341, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=34.9462365591398, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=32.4175824175824, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787526, Length=191, Percent_Identity=27.7486910994764, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=216, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=244, Percent_Identity=29.5081967213115, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=170, Percent_Identity=31.7647058823529, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=242, Percent_Identity=28.5123966942149, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=242, Percent_Identity=28.9256198347107, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=164, Percent_Identity=34.7560975609756, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17542178, Length=227, Percent_Identity=28.6343612334802, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=29.1457286432161, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=240, Percent_Identity=28.75, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=192, Percent_Identity=28.125, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=226, Percent_Identity=30.5309734513274, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=163, Percent_Identity=34.3558282208589, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=225, Percent_Identity=32.8888888888889, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=185, Percent_Identity=28.6486486486486, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=31.9371727748691, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355319, Length=227, Percent_Identity=30.8370044052863, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=31.0880829015544, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=177, Percent_Identity=32.2033898305085, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21356301, Length=183, Percent_Identity=31.6939890710383, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=31.7948717948718, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221331218, Length=261, Percent_Identity=28.3524904214559, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28571526, Length=205, Percent_Identity=30.7317073170732, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24665243, Length=261, Percent_Identity=28.3524904214559, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221331216, Length=262, Percent_Identity=27.8625954198473, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=262, Percent_Identity=27.8625954198473, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30159; Mature: 30159

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKVFITGASQGFGLGITKKLLEQGHQVAATTRNPQKLVDELGANKNLLALKVDLSNQK
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCH
EIDDAVAKTVSTFGSIDILLNNAGYGQLTFEESTDKQIRECFEVNFFGTINVTRSVLPVM
HHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCEEEEHHHHHHHHHH
RKQKYGHIFTTSSIGYVGVPYNSTYAAVKFATDGTESISHELKPFGITVSCIKPGGFRTN
HHHCCCEEEEECCCCEEECCCCCCEEEEEEECCCHHHHHHCCCCCCEEEEEECCCCCEEE
FLSSGSLITGEETISDYKSGRDEFTNLASFDKQQDGDPERYCDFIIDITKGDKVPPVHIF
EECCCCEEECHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHEEEEEEECCCCCCCEEEEE
TGRDSYEYAENKIKQIKEDMEILKTEATDLHVR
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MKNKVFITGASQGFGLGITKKLLEQGHQVAATTRNPQKLVDELGANKNLLALKVDLSNQK
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCH
EIDDAVAKTVSTFGSIDILLNNAGYGQLTFEESTDKQIRECFEVNFFGTINVTRSVLPVM
HHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHHHHHHCCCEEEEHHHHHHHHHH
RKQKYGHIFTTSSIGYVGVPYNSTYAAVKFATDGTESISHELKPFGITVSCIKPGGFRTN
HHHCCCEEEEECCCCEEECCCCCCEEEEEEECCCHHHHHHCCCCCCEEEEEECCCCCEEE
FLSSGSLITGEETISDYKSGRDEFTNLASFDKQQDGDPERYCDFIIDITKGDKVPPVHIF
EECCCCEEECHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHEEEEEEECCCCCCCEEEEE
TGRDSYEYAENKIKQIKEDMEILKTEATDLHVR
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]