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The map label for this gene is rnpA

Identifier: 49188324

GI number: 49188324

Start: 5227936

End: 5228295

Strand: Reverse

Name: rnpA

Synonym: BAS5340

Alternate gene names: 49188324

Gene position: 5228295-5227936 (Counterclockwise)

Preceding gene: 49188325

Following gene: 49188323

Centisome position: 99.99

GC content: 34.17

Gene sequence:

>360_bases
ATGAAGAAAAAACATCGTATAAAAAAGAATGATGAATTCCAGACGGTTTTTCAAAAAGGAAAATCGAATGCGAATCGTCA
ATTTGTTGTCTATCAACTAGATAAAGAAGAGCAGCCAAACTTTCGTATTGGCCTTTCTGTCAGCAAGAAGATAGGAAATG
CAGTAGTGCGTAACCGAATTAAACGTATGATTCGCCAGTCGATCACAGAATTAAAAGATGAGATAGATTCTGGAAAAGAT
TTTGTTATAATAGCAAGGAAGCCTTGTGCAGAGATGACATATGAAGAATTAAAGAAAAGCTTAATTCATGTCTTTAAACG
CTCTGGTATGAAAAGAATAAAAAGTAGCGTAAGGAAATGA

Upstream 100 bases:

>100_bases
GGAAGAAAAGTATTATCTGCGTAGACCACTGATCGTTCAGTGGTCTTTTTTTCTAATAATAGTGAATTTCCGCTGATGAA
CTACAGGAGTGTCAATTGAT

Downstream 100 bases:

>100_bases
ATTACACTATATACATACCGATACAAGGAGGAGTAGGCTTTGAAAAAGAAATTAGGTTTACTAGCCATGGTTGTTGCATT
AATGGCGATTACTGCTGGCT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MKKKHRIKKNDEFQTVFQKGKSNANRQFVVYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEELKKSLIHVFKRSGMKRIKSSVRK

Sequences:

>Translated_119_residues
MKKKHRIKKNDEFQTVFQKGKSNANRQFVVYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEELKKSLIHVFKRSGMKRIKSSVRK
>Mature_119_residues
MKKKHRIKKNDEFQTVFQKGKSNANRQFVVYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEELKKSLIHVFKRSGMKRIKSSVRK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_BACAA (C3P3F8)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002869696.1
- ProteinModelPortal:   C3P3F8
- SMR:   C3P3F8
- EnsemblBacteria:   EBBACT00000127211
- GeneID:   7849053
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_5771
- GeneTree:   EBGT00050000001736
- ProtClustDB:   PRK00499
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14027; Mature: 14027

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKHRIKKNDEFQTVFQKGKSNANRQFVVYQLDKEEQPNFRIGLSVSKKIGNAVVRNRI
CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHH
KRMIRQSITELKDEIDSGKDFVIIARKPCAEMTYEELKKSLIHVFKRSGMKRIKSSVRK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MKKKHRIKKNDEFQTVFQKGKSNANRQFVVYQLDKEEQPNFRIGLSVSKKIGNAVVRNRI
CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHH
KRMIRQSITELKDEIDSGKDFVIIARKPCAEMTYEELKKSLIHVFKRSGMKRIKSSVRK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA