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The map label for this gene is yhcK [H]

Identifier: 49188252

GI number: 49188252

Start: 5148917

End: 5149972

Strand: Reverse

Name: yhcK [H]

Synonym: BAS5267

Alternate gene names: 49188252

Gene position: 5149972-5148917 (Counterclockwise)

Preceding gene: 49188253

Following gene: 49188250

Centisome position: 98.5

GC content: 33.81

Gene sequence:

>1056_bases
ATGTTAAGGGACTTATTTGTAAATACAACAATTATTCTTTCCTTTATTTTTATTGGAGGTCAGCTTTTAAGAGATAAACC
GTTAAAAGAAGAGTTCTCCTTTTGGCAGAAATGTGTAGTTGGTATTCTTACTGGAATATTAAGTGTACTGTTGATGTATT
TTGGTGTACATATTGAAAATATTATGTTGGATCTACGTTATTTAGCGGTTATTTTGGCAATTATAATCGGAGGTCCGATA
GCTAGTAGTATAACAGTTACGATCATTTTAATTACCCGATTATTTTTAACCGAGTACTCTTTAGCCTCTGAATTGGCTTG
TTATACTATTGTATTGATAGGTATTGGGGTTACTTTCATTTGGCGGATGAAAGTTTCTATGTTTACAAGGTGGATCTGGT
TTAATGTATATAGTTTATTTATTTTAGCGGTGCCACTTTCTATGCTGTTTAAGGATATGTCTATAGTAGCATTATATTTA
GTTTGTAGTAGTGTTGCAGCATATATCACATTTATAAGCGCCAATTATGTATTGCAATCCAATGAGTTATTTCAAAAGAT
GAAGCAATATGCAACGATAGATGCATTGACAGGTTTAGGAAACGTAAGGCAGTTTGATTTAGAAATGAATCATCATATTG
GTAATAAGCGCATGAAAAATAATTCACTTTGTTTACTACTTATAGATATTGATCATTTTAAGTCTGTAAACGATACGTAC
GGGCATCCTGCAGGAGATGAAGTATTAAAACAAATAGGGCGTATTTTACGAGAAGTTTCAACGTTTCCAGATTTGGCTTT
TCGAAAGGGTGGAGAGGAGTTCGCGCTTCTTATACCGCAGAAGGGATTAGCTTACGGAATGCGTATGGGGGAACAAGTTC
GCGCAGCTGTTGAAAAACATTCATTCCAATTGTTAGATGGAACAAAAATAAAAATTACAGTTTCAGTAGGAATTTCAGTA
TATGAACAATCACCAGAGCGATTTATTCAAGCTGCTGATGATGCATTATATTACTCCAAAAGAAATGGTAGAAATCAGGT
TAGTTCTGCATCTTAA

Upstream 100 bases:

>100_bases
TGGAACAGCAAAAAATATATAAAAAGCTTTGGGAATTATAGGCATTTCGTATACAATAAAATAAGGAAAGGGATAGATAG
AAAAGTAGGGAGATTATTTT

Downstream 100 bases:

>100_bases
AGATACGATGACCAGAAGAGTTTATAAAAAACACCCACAGAGAGGAAATATATGAACCCTGTGGGTGTTTTCGTTTAGTT
AGACAAGTTCTTTTGATACG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MLRDLFVNTTIILSFIFIGGQLLRDKPLKEEFSFWQKCVVGILTGILSVLLMYFGVHIENIMLDLRYLAVILAIIIGGPI
ASSITVTIILITRLFLTEYSLASELACYTIVLIGIGVTFIWRMKVSMFTRWIWFNVYSLFILAVPLSMLFKDMSIVALYL
VCSSVAAYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTY
GHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSFQLLDGTKIKITVSVGISV
YEQSPERFIQAADDALYYSKRNGRNQVSSAS

Sequences:

>Translated_351_residues
MLRDLFVNTTIILSFIFIGGQLLRDKPLKEEFSFWQKCVVGILTGILSVLLMYFGVHIENIMLDLRYLAVILAIIIGGPI
ASSITVTIILITRLFLTEYSLASELACYTIVLIGIGVTFIWRMKVSMFTRWIWFNVYSLFILAVPLSMLFKDMSIVALYL
VCSSVAAYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTY
GHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSFQLLDGTKIKITVSVGISV
YEQSPERFIQAADDALYYSKRNGRNQVSSAS
>Mature_351_residues
MLRDLFVNTTIILSFIFIGGQLLRDKPLKEEFSFWQKCVVGILTGILSVLLMYFGVHIENIMLDLRYLAVILAIIIGGPI
ASSITVTIILITRLFLTEYSLASELACYTIVLIGIGVTFIWRMKVSMFTRWIWFNVYSLFILAVPLSMLFKDMSIVALYL
VCSSVAAYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTY
GHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKHSFQLLDGTKIKITVSVGISV
YEQSPERFIQAADDALYYSKRNGRNQVSSAS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=34.7058823529412, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=38.6740331491713, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=29.2553191489362, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787802, Length=138, Percent_Identity=36.231884057971, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=35.8490566037736, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082007, Length=207, Percent_Identity=30.4347826086957, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=32.7272727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=31.6129032258064, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=197, Percent_Identity=24.8730964467005, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39605; Mature: 39605

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDLFVNTTIILSFIFIGGQLLRDKPLKEEFSFWQKCVVGILTGILSVLLMYFGVHIEN
CCHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLDLRYLAVILAIIIGGPIASSITVTIILITRLFLTEYSLASELACYTIVLIGIGVTFI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRMKVSMFTRWIWFNVYSLFILAVPLSMLFKDMSIVALYLVCSSVAAYITFISANYVLQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTY
HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCEEEEEEECHHCCCCCCCC
GHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKH
CCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
SFQLLDGTKIKITVSVGISVYEQSPERFIQAADDALYYSKRNGRNQVSSAS
CEEEECCCEEEEEEEECEEHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLRDLFVNTTIILSFIFIGGQLLRDKPLKEEFSFWQKCVVGILTGILSVLLMYFGVHIEN
CCHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLDLRYLAVILAIIIGGPIASSITVTIILITRLFLTEYSLASELACYTIVLIGIGVTFI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRMKVSMFTRWIWFNVYSLFILAVPLSMLFKDMSIVALYLVCSSVAAYITFISANYVLQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NELFQKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSVNDTY
HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCEEEEEEECHHCCCCCCCC
GHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAAVEKH
CCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
SFQLLDGTKIKITVSVGISVYEQSPERFIQAADDALYYSKRNGRNQVSSAS
CEEEECCCEEEEEEEECEEHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]