Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is rho [H]
Identifier: 49188167
GI number: 49188167
Start: 5060451
End: 5061722
Strand: Reverse
Name: rho [H]
Synonym: BAS5181
Alternate gene names: 49188167
Gene position: 5061722-5060451 (Counterclockwise)
Preceding gene: 49188168
Following gene: 49188166
Centisome position: 96.81
GC content: 37.89
Gene sequence:
>1272_bases ATGAATTTGTCAATTGCAGCATTAGAAAACATGAAATTAAAAGAGTTATACGAGCTTGCGAAAGAATTTAAGATTTCGTA TTATAGCAAATTAACGAAAAAAGAGTTAATCTTCGCCATTTTAAAAGCTCGAGCAGAAAAAGAAGGTTTCTTCTTCATGG AAGGCGTATTAGAAATTATTCAATCAGAAGGATTTGGATTCCTACGTCCTATCAACTACTCTCCAAGCTCAGAAGATATT TATATCTCAGCTTCGCAAATTCGTCGTTTCGATTTACGTAATGGAGATAAAGTTTCTGGTAAAGTACGACCTCCGAAAGA AAATGAACGCTACTTTGGATTATTACAAGTTGAAGCTGTAAACGGAGATGATCCAGAGTCAGCAAAAGAGCGTGTGCATT TCCCTGCATTAACACCATTATACCCAGATCGCCAAATGAAATTGGAAACGGAACCGAAAAAGTTACCGACACGCATCATG GATTTAATTGCACCAGTTGGATTTGGACAACGTGGTTTAATTGTCGCGCCTCCAAAGGCTGGTAAAACAAGTCTATTAAA AGAAATCGCGCACAGTGTTACAACAAATCATCCGGAAGCTGAATTAATTGTACTTTTAATTGATGAGCGTCCAGAGGAAG TAACAGACATTGAACGTTCTGTTAAAGGAGATTTTGTAAGCTCTACTTTTGATGAAGTACCAGAAAATCATATTAAAGTA GCGGAACTTGTGTTAGAACGTGCAATGCGTCTTGTAGAGCACAAAAAAGATGTTATCATTTTAATGGATAGTATTACCCG TTTAGCGCGAGCTTACAACCTTGTTATTCCGCCAAGTGGTAGAACATTATCGGGTGGTATCGACCCAGCTGCCTTCCATA GACCGAAGCGCTTCTTTGGAGCTGCACGTAATATTGAAGAAGGCGGTAGCTTAACTATTTTAGCAACAGCGCTTGTTGAT ACAGGATCCCGTATGGATGATGTAATTTACGAAGAATTTAAAGGAACTGGAAATATGGAACTTCACTTAGATCGTTCATT AGCTGAGCGTCGTATCTTCCCGGCAATTGATATTCGCCGTTCTGGTACACGTAAAGAGGATCTATTAATTCCGAAAGAAC ATTTAGACAAGCTGTGGGGTATTCGTAAAACAATGCGTGATACACCAGACTTTGTTGAAAGTTTCTTACGTAAACTTCGT CAAACAAAGACAAATGAAGAATTTTTACAAAACATTGTTGCAGATTCAAAAAGATATGTAACAACTAAGTAA
Upstream 100 bases:
>100_bases CCTACTTGAACTTATTGCCTTTCATTATTAATTATTTGCCTTCCGTATTTTTTCCCTTTACCCATGTGAAAAGAGAATAA CGTTAAAGTGTGGTGTCTGA
Downstream 100 bases:
>100_bases AGGGAAAAGATTGGGACTCGCTTATTTTGTGGTAAGCGAGTTTTTTATGTTTTTTAGGTGATGTTAAAGAGAGATGCGTG GAAGAATCTCCGGTCATTTC
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEIIQSEGFGFLRPINYSPSSEDI YISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAVNGDDPESAKERVHFPALTPLYPDRQMKLETEPKKLPTRIM DLIAPVGFGQRGLIVAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDEVPENHIKV AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVD TGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRRSGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLR QTKTNEEFLQNIVADSKRYVTTK
Sequences:
>Translated_423_residues MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEIIQSEGFGFLRPINYSPSSEDI YISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAVNGDDPESAKERVHFPALTPLYPDRQMKLETEPKKLPTRIM DLIAPVGFGQRGLIVAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDEVPENHIKV AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVD TGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRRSGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLR QTKTNEEFLQNIVADSKRYVTTK >Mature_423_residues MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEIIQSEGFGFLRPINYSPSSEDI YISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAVNGDDPESAKERVHFPALTPLYPDRQMKLETEPKKLPTRIM DLIAPVGFGQRGLIVAPPKAGKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDEVPENHIKV AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVD TGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRRSGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLR QTKTNEEFLQNIVADSKRYVTTK
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=415, Percent_Identity=57.3493975903614, Blast_Score=484, Evalue=1e-138,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 48130; Mature: 48130
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEII CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV HHCCCCEEEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEE NGDDPESAKERVHFPALTPLYPDRQMKLETEPKKLPTRIMDLIAPVGFGQRGLIVAPPKA CCCCCHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCC GKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDEVPENHIKV CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHH AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEECCCCCEECCCCCHHHHHCCHHHHH AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR HHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCEECCC SGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLRQTKTNEEFLQNIVADSKRYV CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEE TTK CCC >Mature Secondary Structure MNLSIAALENMKLKELYELAKEFKISYYSKLTKKELIFAILKARAEKEGFFFMEGVLEII CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV HHCCCCEEEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEE NGDDPESAKERVHFPALTPLYPDRQMKLETEPKKLPTRIMDLIAPVGFGQRGLIVAPPKA CCCCCHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCC GKTSLLKEIAHSVTTNHPEAELIVLLIDERPEEVTDIERSVKGDFVSSTFDEVPENHIKV CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHH AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEECCCCCEECCCCCHHHHHCCHHHHH AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR HHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCEECCC SGTRKEDLLIPKEHLDKLWGIRKTMRDTPDFVESFLRKLRQTKTNEEFLQNIVADSKRYV CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEE TTK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8423140; 9353933; 9384377 [H]