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The map label for this gene is ydcM [C]

Identifier: 49188003

GI number: 49188003

Start: 4890613

End: 4891770

Strand: Reverse

Name: ydcM [C]

Synonym: BAS5017

Alternate gene names: 49188003

Gene position: 4891770-4890613 (Counterclockwise)

Preceding gene: 49188004

Following gene: 49188002

Centisome position: 93.56

GC content: 33.25

Gene sequence:

>1158_bases
ATGAGAAGAGCATATTTTATAGAGATAAAACCGACACATGAACAAATAACCAAGATCAATCAAACGATTGGGGTTTGTAG
GTACGTTTACAATCTGTATCTCTCCAAAAACAAAGAGATGTATGAATCAGAGGGAAGGTTCCTTAGTGGATATGATTTTT
CTAAATGGCTAAACAATGTTTATACAAAAGAATGTAGTCAATGGATTAAAAAGGTATCTAGTAAAGCGGTAAAACAGGCC
ATTATGAATGGAGATAAAGCTTTTAAAAGATTCTTTCAGGGTTTATCTGGATTTCCACGTTATAAGAAAAAGAAGAATCA
AGATGTGAAATGCTATTTTCCTAAAAACAACAAAACAGATTGGACAGTAGAAAGACATAGAGTAAAAGTTCCAACGATTG
GTTGGATGAGGTTAAAAGAATATGGGTATATCCCAAAAAATACGATTGTAAAAAGTGGGACGATAGGTAAAAGAGCAGGA
AGATATTTTGTATCTGTGCTTTGCGAATGGAAAGAAGCAGAAATGAAGCCAATACTCAATCAAACAGGTCTAGGTATTGA
TTTGGGGGTAAAGGATTTCGCTATACGTAGCGATGGTATCGTTTATGAAAATATGAACAAAACAATACAAGTAAAAAAGA
TAGAAAAACGGTTGAAACGTGAACAACGCTCTTTATCACGCAAATTTGAAAATATAAGAAAGAGAGGTGAACAATCTGCT
ACTAACAAAAGAGCGAATATAGATAAAAATATTCTTAGGGTGCAAAAACTACATGCCAAGCTAGCAAATATTCGATTAGC
GTATGTAAAATCTGTTGTAAATGATGTGGTGAAAACCAAGCCAACGTTTATTACAGTGGAAGATTTGAATGTAAAAGGTA
TGATGAAGAATAAACATCTATCTAAAGCAGTTGCTAAGCAGTGCTTTTATACATTTAAAACATGGTTATTGACGAAATGT
GAGGAATATGGAATTGAATTACGTCAAGTAGACAGGTTCTATCCATCTTCAAAGCTATGTTCATACTGTGGTCAAAAGAA
AGTAGACTTAAAGCTATCCGACCGAGTATATACATGTAACTGTGGAAATGTAATGGATAGAGATTTGAACGCGTCAATAA
ACCTTTTACAAGCAAAAAAATATACAATACTAACGTAA

Upstream 100 bases:

>100_bases
ACAAGAAGAAATTGTTCAAGATTTGCTATCTATCATTCGTGTATGTAGTTGTAAGATATATGATTGAGAAAATACAAAAA
ATGTCGAGGGATAAAGAGAC

Downstream 100 bases:

>100_bases
ATAGATTGTATATATGTACGGTGGGCTACATCGGAATTTACGCCTGTGGAGTGTTAGATCAAACTGTAGTAGCGAGTGGT
TGGCAAGGCAGGACACGTAG

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MRRAYFIEIKPTHEQITKINQTIGVCRYVYNLYLSKNKEMYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQA
IMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKTDWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAG
RYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSA
TNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKTKPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTCNCGNVMDRDLNASINLLQAKKYTILT

Sequences:

>Translated_385_residues
MRRAYFIEIKPTHEQITKINQTIGVCRYVYNLYLSKNKEMYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQA
IMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKTDWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAG
RYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSA
TNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKTKPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTCNCGNVMDRDLNASINLLQAKKYTILT
>Mature_385_residues
MRRAYFIEIKPTHEQITKINQTIGVCRYVYNLYLSKNKEMYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQA
IMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKTDWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAG
RYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSA
TNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKTKPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTCNCGNVMDRDLNASINLLQAKKYTILT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=373, Percent_Identity=29.2225201072386, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45057; Mature: 45057

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAYFIEIKPTHEQITKINQTIGVCRYVYNLYLSKNKEMYESEGRFLSGYDFSKWLNNV
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCCHHHHHHHH
YTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKTD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCC
WTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAGRYFVSVLCEWKEAEMKPILN
CEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSA
HCCCCEEECCHHEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKTKPTFITVEDLNVKGMMKNKHL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTCN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEC
CGNVMDRDLNASINLLQAKKYTILT
CCCCCCCCCCCCEEEEEECCEEECC
>Mature Secondary Structure
MRRAYFIEIKPTHEQITKINQTIGVCRYVYNLYLSKNKEMYESEGRFLSGYDFSKWLNNV
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCCHHHHHHHH
YTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKTD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCC
WTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAGRYFVSVLCEWKEAEMKPILN
CEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSA
HCCCCEEECCHHEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKTKPTFITVEDLNVKGMMKNKHL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTCN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEC
CGNVMDRDLNASINLLQAKKYTILT
CCCCCCCCCCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]