Click here to switch to the map view.

The map label for this gene is ygzD [H]

Identifier: 49187883

GI number: 49187883

Start: 4776940

End: 4777161

Strand: Reverse

Name: ygzD [H]

Synonym: BAS4895

Alternate gene names: 49187883

Gene position: 4777161-4776940 (Counterclockwise)

Preceding gene: 49187885

Following gene: 49187882

Centisome position: 91.36

GC content: 41.89

Gene sequence:

>222_bases
ATGAAGCTTCAAAATCGAGTGAGGGAATTGCGAGCAAAGCATCGTTTATCACAAGGGGATTTAGGGAAAGCGATTGGATC
ATCAAGGCAAACGATTAGTTTAATTGAGCGCGGGGATTATGCACCATCTATTGTATTGTCGTTAAAAATCGCACACATAT
TCAATGTACCGGTGGAGGAAATATTCACGTTAGTGGAGGGGGAAGATGATGGTGAAGAGTAA

Upstream 100 bases:

>100_bases
TTATTTTTGTCAATTATTAACGTCAAAATGACAATTATAATTGACAAAAATAAGGATATTATTTACAATTTTAATTAAAT
AAATGAAAAAGAGGGAAGAT

Downstream 100 bases:

>100_bases
ACTGGGAGAACAATTTATTAGTTTTTGCAAACTCATATTAAGTATGGTAGGTGGCTTTTTTGCATCTTATATAGCTTTAG
ATTTACTCTCGGATGAACCG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFTLVEGEDDGEE

Sequences:

>Translated_73_residues
MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFTLVEGEDDGEE
>Mature_73_residues
MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFTLVEGEDDGEE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8175; Mature: 8175

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE
CCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
IFTLVEGEDDGEE
HHHHHCCCCCCCC
>Mature Secondary Structure
MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE
CCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
IFTLVEGEDDGEE
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]