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The map label for this gene is yobU [H]

Identifier: 49187789

GI number: 49187789

Start: 4694528

End: 4695007

Strand: Direct

Name: yobU [H]

Synonym: BAS4799

Alternate gene names: 49187789

Gene position: 4694528-4695007 (Clockwise)

Preceding gene: 49187787

Following gene: 49187790

Centisome position: 89.78

GC content: 37.92

Gene sequence:

>480_bases
ATGATAAACGAACCTATCATCGTAAAAAAAGAAGCTTTCCAAGCAATCGGCATTTCGATTACGACAACAAATGAAAAAGA
GGCATCTACAGAAGGAAAAATTCCCGGGCTTTGGAACCGGTACTTCCAAGAACAAATCATGCACCACATTCCAAATCAAC
AAACGAAAGAAACATTCGCTTTTTACTCAAACTATGAATCAGATGAAACGGGTACATATACCTTTACGATTGGCATGCCC
GTTTCTTCATTAGAAGACGTTCCTGAAACTATGACAACTTTAATAATACCTGCCGCTACGTATGCGGTATTTACAACGAG
AAAGGGACCAGTTGCTGAAGTCGTTTGCGAGGCTTGGGAATATATTTGGAAATGGTCAAAAGAAAATAAACGTGCTTTCA
CAATAGACTTTGAGCTTTATGATGAAAGAGCGTTAGATCCAACTAACGTACAATTGGATATTTATATTGCATTAGCCTAA

Upstream 100 bases:

>100_bases
ATTTATCATTAAAATTTTCGAAAAATAGTAACCGTTATATGTAAAAATATGTTACATTATAACAAGAACAAACGTTCTTA
TTATAAAGGAGGAATTTTTC

Downstream 100 bases:

>100_bases
ACGACAAAAAAGAAGATACCATTTGGTATCTTCTTTTTTGTCGTTAAATAGCCACTGTGCAAATTCAACATAATTGTCTA
CAATGAGAAAGTGCAGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MINEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYTFTIGMP
VSSLEDVPETMTTLIIPAATYAVFTTRKGPVAEVVCEAWEYIWKWSKENKRAFTIDFELYDERALDPTNVQLDIYIALA

Sequences:

>Translated_159_residues
MINEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYTFTIGMP
VSSLEDVPETMTTLIIPAATYAVFTTRKGPVAEVVCEAWEYIWKWSKENKRAFTIDFELYDERALDPTNVQLDIYIALA
>Mature_159_residues
MINEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYESDETGTYTFTIGMP
VSSLEDVPETMTTLIIPAATYAVFTTRKGPVAEVVCEAWEYIWKWSKENKRAFTIDFELYDERALDPTNVQLDIYIALA

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 18248; Mature: 18248

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFA
CCCCCEEEEHHHHHEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
FYSNYESDETGTYTFTIGMPVSSLEDVPETMTTLIIPAATYAVFTTRKGPVAEVVCEAWE
HHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH
YIWKWSKENKRAFTIDFELYDERALDPTNVQLDIYIALA
HHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MINEPIIVKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFA
CCCCCEEEEHHHHHEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
FYSNYESDETGTYTFTIGMPVSSLEDVPETMTTLIIPAATYAVFTTRKGPVAEVVCEAWE
HHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH
YIWKWSKENKRAFTIDFELYDERALDPTNVQLDIYIALA
HHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]