Click here to switch to the map view.

The map label for this gene is vanY [H]

Identifier: 49187734

GI number: 49187734

Start: 4625357

End: 4626217

Strand: Reverse

Name: vanY [H]

Synonym: BAS4743

Alternate gene names: 49187734

Gene position: 4626217-4625357 (Counterclockwise)

Preceding gene: 49187735

Following gene: 49187733

Centisome position: 88.48

GC content: 33.57

Gene sequence:

>861_bases
ATGAAAAAGTGGGTATTTATTTCTTTTTTTATCGCATGCACAATCTGTGTAGGCGTTTATATATCACCGTTATTTCAAAA
GGAAATTGATGTGAAAATCGGCGGGGAAAATGGTGCAGTAAAGAATGCAAATATAGAAAAGATAGAGGTTACAAAAGAAC
AAATTTATAAAGGGGATCTATTATTAGTTAACAAAGATTATCCAGTAAAAAAAGATAGTATTAGGTCTGACATTATAAAT
GTAAATCATAATAGTGAATTAGTAAGGGGCTATGTAATATTTGATAGAAACCTTCGTTTATCAAAGGATGTTGTAAAAAA
GTTTTTGAACGTGGTCGATGCGGCTGGAAAAGATGGTGTACAACATTTCTTAATGAATAGCGGGTATCGAGATTTTAAAG
AGCAAAGTAAATTATATAAAGAAATGGGATCAGATTATGCACTTCCAGCAGGATATAGTGAACATAATTTAGGATTATCA
CTGGACGTTGGTTCAACGCAAAAGAAAATGGAGAAAGCGCCTGAAGGAAAATGGATTGAAGAGAATGTATGGAAGCACGG
ATTTGTATTACGTTATCCGAAAAATAAAAGTCATATTACAGGCATTCAATATGAACCGTGGCACATTCGTTATGTCGGCT
TGCCTCATAGCGCAATTATGCAAAAAAAGAAAATTACATTAGAAGAATACTTAGACTTCTTAAAAGAAAAAAAAGAAATC
ACAACCGATGTGGAAGGTAAGAAATATACGGTTTCTTATTATAAAGTGTCGGGTAATATGAAAGTGAATGTTCCGTTGAA
TAAGCAGTATGAAATTTCGGGGAACAATGTGGACGGGGTTATTGTGACGGTTCAGGAATAG

Upstream 100 bases:

>100_bases
AAGAAGTTGACAATTTAATAAAAATTTAAACTTTCCCCCACTTTTTATTTTAATAGTTTTTTCTATTCTAGACGTAAGTT
ACGTTAAGGAGGAACTAGAA

Downstream 100 bases:

>100_bases
AGAAAAAGCTATCTGAAGTAGATAGCTTTTTTTCTGGTTGGCTCCCGTCACATACTTATCAAGCTAGCGAAATAAATCAA
TGGATACGAAATATGATTGT

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKKWVFISFFIACTICVGVYISPLFQKEIDVKIGGENGAVKNANIEKIEVTKEQIYKGDLLLVNKDYPVKKDSIRSDIIN
VNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDGVQHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLS
LDVGSTQKKMEKAPEGKWIEENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEI
TTDVEGKKYTVSYYKVSGNMKVNVPLNKQYEISGNNVDGVIVTVQE

Sequences:

>Translated_286_residues
MKKWVFISFFIACTICVGVYISPLFQKEIDVKIGGENGAVKNANIEKIEVTKEQIYKGDLLLVNKDYPVKKDSIRSDIIN
VNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDGVQHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLS
LDVGSTQKKMEKAPEGKWIEENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEI
TTDVEGKKYTVSYYKVSGNMKVNVPLNKQYEISGNNVDGVIVTVQE
>Mature_286_residues
MKKWVFISFFIACTICVGVYISPLFQKEIDVKIGGENGAVKNANIEKIEVTKEQIYKGDLLLVNKDYPVKKDSIRSDIIN
VNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDGVQHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLS
LDVGSTQKKMEKAPEGKWIEENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEI
TTDVEGKKYTVSYYKVSGNMKVNVPLNKQYEISGNNVDGVIVTVQE

Specific function: Vancomycin-inducible, penicillin-resistant, DD- carboxypeptidase that hydrolyzes depsipeptide- and D-alanyl-D- alanine-containing peptidoglycan precursors. Insensitive to beta- lactams [H]

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 32784; Mature: 32784

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWVFISFFIACTICVGVYISPLFQKEIDVKIGGENGAVKNANIEKIEVTKEQIYKGDL
CCCEEEHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEECCCCEEEEECHHHHCCCCE
LLVNKDYPVKKDSIRSDIINVNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDGV
EEEECCCCCCHHHHHHHEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHH
QHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLSLDVGSTQKKMEKAPEGKWIE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCH
ENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEI
HHHCCCCEEEECCCCCCCEECEEECCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH
TTDVEGKKYTVSYYKVSGNMKVNVPLNKQYEISGNNVDGVIVTVQE
CCCCCCCEEEEEEEEEECCEEEEECCCCEEEECCCCCCEEEEEEEC
>Mature Secondary Structure
MKKWVFISFFIACTICVGVYISPLFQKEIDVKIGGENGAVKNANIEKIEVTKEQIYKGDL
CCCEEEHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEECCCCEEEEECHHHHCCCCE
LLVNKDYPVKKDSIRSDIINVNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDGV
EEEECCCCCCHHHHHHHEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHH
QHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLSLDVGSTQKKMEKAPEGKWIE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCH
ENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEI
HHHCCCCEEEECCCCCCCEECEEECCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH
TTDVEGKKYTVSYYKVSGNMKVNVPLNKQYEISGNNVDGVIVTVQE
CCCCCCCEEEEEEEEEECCEEEEECCCCEEEECCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1398115; 8380148 [H]