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The map label for this gene is yxdJ [H]

Identifier: 49187716

GI number: 49187716

Start: 4608550

End: 4609245

Strand: Direct

Name: yxdJ [H]

Synonym: BAS4725

Alternate gene names: 49187716

Gene position: 4608550-4609245 (Clockwise)

Preceding gene: 49187715

Following gene: 49187717

Centisome position: 88.14

GC content: 37.5

Gene sequence:

>696_bases
ATGTACAAAATTTTAATCGTTGAAGACGATCCAAATATTTCATCATTACTACAATCTCACATTCAAAAATACGGCTATGA
AGCTGTTGTTGCAGAGAATTTCGATGATATTATGGAATCGTTTAACGCAGTGAAACCACATCTTGTTTTACTTGATGTAA
ACTTACCGAAATTCGATGGGTTCTACTGGTGCCGCCAAATTCGTCATGAATCTACTTGTCCTATTATTTTCATTTCAGCT
CGTGCTGGTGAGATGGAACAAATTATGGCGATTGAAAGCGGTGCGGATGATTATATTACAAAACCGTTCCACTACGACGT
TGTAATGGCAAAAATTAAAGGTCAATTACGCCGTATTTACGGTGATTATGCGCCAAATATTTCTGAACGTATCGTTGAAG
TAGAAGGTTTAAAACTATTCCCAGAACGCCCTGAAATTCACTTCGGATCTGAGCAAGTTCTTTTAACGAAGAAAGAAGCT
ATTTTAGCAGAAATGTTATTATCTAAATTTCCTCGTACAGCGAGCCGTGAAGATTTATTAGCTGCCCTTTGGGATGACGA
GAGCTTTGTTGAAGAAAACACATTAAACGTAAACATTACGCGTCTTCGTAAAAAGTTCAATGAGCTTGGTATTGAAAATG
CTATTGAAACAGTGCGCGGACTTGGGTATCGTTTTAACGCAACTTGGAGTGAATAA

Upstream 100 bases:

>100_bases
TTGCCCTATACTGTTTATTAGCTTATCTTTCAACATAATGAAAAGACTTGAAACACATGATACACTATATCTACAATTGT
TTTTTAGGAGGAATATACAT

Downstream 100 bases:

>100_bases
GCATGAAGCTATTTTTACGTGATCATTTTGCATTTTTTCTACTGTACATATTAAACTTCGGTATCATCTTCGTTCTTTAT
GATGCAGTAGATGGATTTCA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MYKILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDGFYWCRQIRHESTCPIIFISA
RAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEA
ILAEMLLSKFPRTASREDLLAALWDDESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFNATWSE

Sequences:

>Translated_231_residues
MYKILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDGFYWCRQIRHESTCPIIFISA
RAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEA
ILAEMLLSKFPRTASREDLLAALWDDESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFNATWSE
>Mature_231_residues
MYKILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDGFYWCRQIRHESTCPIIFISA
RAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEA
ILAEMLLSKFPRTASREDLLAALWDDESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFNATWSE

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=34.6491228070175, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=33.4801762114537, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787375, Length=224, Percent_Identity=29.9107142857143, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=34.3347639484979, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=30.0884955752212, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=30.9734513274336, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=33.9130434782609, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=28.9473684210526, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=29.5154185022026, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787229, Length=233, Percent_Identity=30.9012875536481, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.2576419213974, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=27.9279279279279, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=27.7533039647577, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693140, Length=246, Percent_Identity=28.8617886178862, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788550, Length=105, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26640; Mature: 26640

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDG
CEEEEEEECCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCH
FYWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIY
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLL
HCCCCCHHHHHEEECCEEECCCCCCEEECCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHH
AALWDDESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFNATWSE
HHHCCCHHHHCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCC
>Mature Secondary Structure
MYKILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDG
CEEEEEEECCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCH
FYWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIY
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLL
HCCCCCHHHHHEEECCEEECCCCCCEEECCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHH
AALWDDESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFNATWSE
HHHCCCHHHHCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]