Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is ydeE [H]
Identifier: 49187715
GI number: 49187715
Start: 4607476
End: 4608348
Strand: Direct
Name: ydeE [H]
Synonym: BAS4724
Alternate gene names: 49187715
Gene position: 4607476-4608348 (Clockwise)
Preceding gene: 49187706
Following gene: 49187716
Centisome position: 88.12
GC content: 36.88
Gene sequence:
>873_bases ATGGATTCACTTAAAAACATGAATGCAGCAATGCAGTATATTGAAGAAAACCTTACACATGAAATTGATTTTAAGGAAGT CGCAAAAATAGCTTACTGCTCCGAGTATCATTTCAAAAGAATGTTTTCTTTCCTAGCTGGCATATCACTATCAGAATATA TTCGCTGCAGACGTCTTACTCTGGCTGCTTTTGAACTAAAAAATAGCGATGCAAAAGTTATTGATGTCGCTATAAAATAT GGCTACAATTCACCCGATTCATTCTCTCGTGCGTTTCAGAACTTGCACGGCATAACACCTTCAGAGGCCCGAAGTAGTAG TCATTCTTTAAAAGCTTATTCACCCATGACCTTCCAATTATCCATTCAAGGAGGACATGAAATGAACTATCGAATTGAAG AAAAAGAACCATTTCAAATTATAGGTATTACAAAACGAGTACCAATCGTTTTTAACGGTGTAAATGAAGAAATTGCTTCT ATGTGGAAAAGTTTAAATCCAGAGGCTATTCAAACATTAAAGTCCCTTTCAAACATGGAACCTACTGGAATCATTAGTGC TTCTACTAACTTTTCTGAAGGACGAATGGAGGAAAAAGGAGAACTTGATCACTACATTGGAGTAGCCACAACGAAAGATT GTCCAGAGCAATTCGCGCAACTTGAAGTCGCAGCTTCAACATGGGCTATATTTGAAGCTGTCGGTCCATTTCCTGAAACA TTACAAAATGTATGGGGACGTATTTATTCCGAATGGTTTCCTTCCTCAAACTATGAATTAGCGGAAGGACCGGAAATATT GTGGAATGAACAGAAAGATATATCTTCTCCAAACTTTAAAAGTGAAATTTGGATACCGGTTTTGAAGAAATAA
Upstream 100 bases:
>100_bases AATTTTGTAAGGTTAAAAATATACCCTACAAAGTTGTGCATGAAATGTCGGATGGAGCTATTTTTTTCCTGCTATTCTAT TTAACAAGGAGGTTATGGTT
Downstream 100 bases:
>100_bases AAATAAAGCTGCTTTTCCTTTTTAGGAAGGGCAGCTTTGTTTTACATTTTAGTTCTTTTTAATTGTCAATTATATATACG CCCTTTTTACTTTTTACGCT
Product: AraC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MDSLKNMNAAMQYIEENLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSDAKVIDVAIKY GYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKEPFQIIGITKRVPIVFNGVNEEIAS MWKSLNPEAIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFAQLEVAASTWAIFEAVGPFPET LQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK
Sequences:
>Translated_290_residues MDSLKNMNAAMQYIEENLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSDAKVIDVAIKY GYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKEPFQIIGITKRVPIVFNGVNEEIAS MWKSLNPEAIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFAQLEVAASTWAIFEAVGPFPET LQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK >Mature_290_residues MDSLKNMNAAMQYIEENLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSDAKVIDVAIKY GYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKEPFQIIGITKRVPIVFNGVNEEIAS MWKSLNPEAIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFAQLEVAASTWAIFEAVGPFPET LQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK
Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And
COG id: COG3708
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=34.6153846153846, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790857, Length=106, Percent_Identity=31.1320754716981, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: 2500 (L-broth) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010499 - InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR020449 - InterPro: IPR018060 - InterPro: IPR011256 [H]
Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 32986; Mature: 32986
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSLKNMNAAMQYIEENLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLT CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAAFELKNSDAKVIDVAIKYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQL HHEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEECCEEEEE SIQGGHEMNYRIEEKEPFQIIGITKRVPIVFNGVNEEIASMWKSLNPEAIQTLKSLSNME EECCCCCCCEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCC PTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFAQLEVAASTWAIFEAVGPFPET CCEEEEECCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK HHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC >Mature Secondary Structure MDSLKNMNAAMQYIEENLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLT CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAAFELKNSDAKVIDVAIKYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQL HHEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEECCEEEEE SIQGGHEMNYRIEEKEPFQIIGITKRVPIVFNGVNEEIASMWKSLNPEAIQTLKSLSNME EECCCCCCCEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCC PTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFAQLEVAASTWAIFEAVGPFPET CCEEEEECCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK HHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]