Click here to switch to the map view.

The map label for this gene is yshB [H]

Identifier: 49187444

GI number: 49187444

Start: 4362362

End: 4362901

Strand: Reverse

Name: yshB [H]

Synonym: BAS4449

Alternate gene names: 49187444

Gene position: 4362901-4362362 (Counterclockwise)

Preceding gene: 49187445

Following gene: 49187443

Centisome position: 83.44

GC content: 32.59

Gene sequence:

>540_bases
ATGATTGATATTATTATCATTTTACTGCTTGTTATGGGATTTTTCCTCGGCTTACGCAGAGGGTTTATTCTGCAACTTGT
AAAGTTAACAAGCTTTATTATCGCATACCTTGTTGCATACTGGTACTGTAAAGATTTAGCGCCAGCACTTGCAAAATTTA
TTCCGTATCCATTTGATAAAAATGTATCTGTTCCAGAATGGATTGATGCAAATAATATTGAAACAGTATTTTATCAAGCG
CTTGCGTTTATTATATTGTTTATTATTACAAAAATTGCACTTTCATTACTTGGTAATTTGTTAAATATGTTTGCAGAAAT
ACCGGTTTTAAAGCAAGTAAATGCGTTTGCGGGGGCAATCCTCGGATTTTTAGAAGTATATATTATTTTGTTTGTCTTAA
TTATCATTGGGAACATTCTTCCGATTGAACAATTACAAACACCATTACAACAATCATCAATTAGCAAAATAATTGTAGAC
GATACACCGATTCTCTCTGAAAAGGTGAAGGAACTATGGCAGACAGGTAGCAGAGTATAA

Upstream 100 bases:

>100_bases
GCGGTATTGACGGCGGTAAACGTCATACACGATTACATAAAATTAAAAGAAGAACATGAGAAATTGAAAGAAAGTATGAC
AAAAAAAGGAATGGAATAAC

Downstream 100 bases:

>100_bases
CTTCTCTTTTTTCGGAAAGAGAAGTTTTTTTCTATGAAAGAAAGGCGGGACAATGATGAAAGTAAATAAAAAACAAGTAA
TTAAATTATTAGAGACAATC

Product: cvpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKFIPYPFDKNVSVPEWIDANNIETVFYQA
LAFIILFIITKIALSLLGNLLNMFAEIPVLKQVNAFAGAILGFLEVYIILFVLIIIGNILPIEQLQTPLQQSSISKIIVD
DTPILSEKVKELWQTGSRV

Sequences:

>Translated_179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKFIPYPFDKNVSVPEWIDANNIETVFYQA
LAFIILFIITKIALSLLGNLLNMFAEIPVLKQVNAFAGAILGFLEVYIILFVLIIIGNILPIEQLQTPLQQSSISKIIVD
DTPILSEKVKELWQTGSRV
>Mature_179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKFIPYPFDKNVSVPEWIDANNIETVFYQA
LAFIILFIITKIALSLLGNLLNMFAEIPVLKQVNAFAGAILGFLEVYIILFVLIIIGNILPIEQLQTPLQQSSISKIIVD
DTPILSEKVKELWQTGSRV

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20206; Mature: 20206

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKFIPYPFDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVSVPEWIDANNIETVFYQALAFIILFIITKIALSLLGNLLNMFAEIPVLKQVNAFAGAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFLEVYIILFVLIIIGNILPIEQLQTPLQQSSISKIIVDDTPILSEKVKELWQTGSRV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKFIPYPFDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVSVPEWIDANNIETVFYQALAFIILFIITKIALSLLGNLLNMFAEIPVLKQVNAFAGAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFLEVYIILFVLIIIGNILPIEQLQTPLQQSSISKIIVDDTPILSEKVKELWQTGSRV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]