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The map label for this gene is ycbL [H]

Identifier: 49187428

GI number: 49187428

Start: 4342591

End: 4343283

Strand: Reverse

Name: ycbL [H]

Synonym: BAS4433

Alternate gene names: 49187428

Gene position: 4343283-4342591 (Counterclockwise)

Preceding gene: 49187430

Following gene: 49187427

Centisome position: 83.07

GC content: 34.49

Gene sequence:

>693_bases
ATGTCACATCATATTTTATTAGTTGAAGATGATCTCTCAATTCAAGAGATGGTGGAAAAGTATTTAGTGAAGGAAGGCTT
TCAAGTTACAATTGCATCTGACGGAGAAGAAGGGGTAGACACATATTTAAAAGGTTCCTTTGATTTGATTATCCTCGACA
TTATGATGCCAAAGCTAGATGGCTTAGAGGTTGTACGTATTATTCGTGAAAAAAGTGCCGTTCCGATTTTAATGATGTCA
GCAAAAGATACAGATGTTGATAAAGCTGTTGGATTAGGACTTGGAGCAGATGATTACATTTGTAAGCCATTTTCTATGAT
TGAATTAGCCGCGCGTGTAAAAGCAGGTATTCGCAGGTCTACGAAATATTCGGCTACAGAAACAACAGAAAAGATGATTC
AAATTGGTGATTTAACGATTGATCCAATTAATTTTACTGTGGAAAAAAACGGGAAGCCTCTCAAACTTACTTTAAAAGAA
TTTGAGATTTTAAAACTGTTTGTAAAGAATCAAAATCGTGTATTTACAAAAGCACAAATATATACACTAATTTGGAACGA
AGAGTATTACGGTGACGATAACGTTATTAATGTTCATATGAGAAGATTGCGTGAGAAAATCGAAAGTGATCCATCTAATC
CAGAATACATTAAAACGTTATGGGGCATCGGTTATAAGTTGGAAGTGATGTAA

Upstream 100 bases:

>100_bases
AAGGAAGGGAAGTTGGTTTGAAAATTCATATATTTGTTTCAAGTCTGTAGTAGTTACGATACAATTGAATTGTTAACGTT
TGTAAAAAGGGGATAGACAT

Downstream 100 bases:

>100_bases
TATGGTCAATTTGTTAATAAGTATTATTTTTATATTGTTATGTGTCATTTACATACAATATAAAATGAGAAAAAATAGTA
GTGAAAATTTAAGATACACA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLEVVRIIREKSAVPILMMS
AKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKE
FEILKLFVKNQNRVFTKAQIYTLIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEVM

Sequences:

>Translated_230_residues
MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLEVVRIIREKSAVPILMMS
AKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKE
FEILKLFVKNQNRVFTKAQIYTLIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEVM
>Mature_229_residues
SHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLEVVRIIREKSAVPILMMSA
KDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEF
EILKLFVKNQNRVFTKAQIYTLIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEVM

Specific function: Member of the two-component regulatory system ycbM/ycbL [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=36.5638766519824, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=38.9380530973451, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=37.117903930131, Blast_Score=153, Evalue=9e-39,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=34.9775784753363, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=34.3478260869565, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=33.0357142857143, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=34.2105263157895, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=31.7391304347826, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=33.0357142857143, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=30.5676855895196, Blast_Score=123, Evalue=8e-30,
Organism=Escherichia coli, GI2367329, Length=224, Percent_Identity=32.5892857142857, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=31.140350877193, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=32.5991189427313, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=30.3964757709251, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790299, Length=142, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=30.2752293577982, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787487, Length=142, Percent_Identity=30.9859154929577, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790437, Length=140, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=109, Percent_Identity=35.7798165137615, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26258; Mature: 26127

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD
CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCC
GLEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRS
CHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
TKYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQI
CCCCCHHHHHHHHHHCCEEECCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEE
YTLIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEVM
EEEEECCCEECCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEC
>Mature Secondary Structure 
SHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD
CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCC
GLEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRS
CHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
TKYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQI
CCCCCHHHHHHHHHHCCEEECCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEE
YTLIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEVM
EEEEECCCEECCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]