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The map label for this gene is gerM [H]

Identifier: 49187373

GI number: 49187373

Start: 4290264

End: 4291313

Strand: Reverse

Name: gerM [H]

Synonym: BAS4378

Alternate gene names: 49187373

Gene position: 4291313-4290264 (Counterclockwise)

Preceding gene: 49187374

Following gene: 49187372

Centisome position: 82.07

GC content: 36.76

Gene sequence:

>1050_bases
ATGCCTAAATCCACTTTTAAATGGGTTGTTGGTGCTACTGTGAGCGCTGTTTTACTAACAGGGTGTGGCTTTATAAATCA
AGAGAAAGCAACGGAACAAATTGATCCGCCAAAACAAGTTACGTACACGGAAGGTGGAAAGAAAGAAGTATTTAAGAAAG
ATAAGCAAGCACAAACGGTGAATAGAGAATTATACCTTGTTGATAAAAATGGTTATGTTGTACCACAAACGTTAGCTATA
CCTACTCCGAAAGCAAATGAGGTTATTCAGCAAACGTTAGAGTATCTTGTGAAAGATGGGCCGGTAACGAATTTATTACC
CAATGGTTTCCGTGCGGTCATTCCAGCCAATACATCGATGACACTAGATTTAAAAAAAGATGGGACGGCAGTCATTGATT
TCTCAAAAGAAATGAAAAACTATGCAAAAGAAGAAGAGCGTCAAATTGTTGAGTCGATAGCATGGACGTTGACGCAATTT
AAAGAAGTAAAACAAGTGCAGTTCCAAATAAATGGTGAAAAATTAGCGAAGATGCCTGTTGGTGGTACACCGCTCGGTGA
CGGTGTGAGCCGTGCGAACGGTATCAATTTCGATGATGAACAAGTAGCGGATGTAACGAATACAAAACCGGTAACGCTGT
ATTTTATGGCGCAAAATAATAATAAACAGCAATATTACGTACCAGTAACACGCCGCGTTGTAGAAGGGAAAGAAAATGAT
TATGCAGCCATTGTAGATGAACTTGTAAAAGGACCGATTCATCAATCGCTCTTAAATGATTTTAATCCAGGAGTTAAGCT
GATTACGAATCCGAAATTACAAGACGGAAATCTTACATTAAACTTTAATGAAAATATATTTATCAACCCAGATAAAAATA
TGATTTCAAATTACGTATTGAAGTCGTTAGTTTTATCTTTAACAGAAAAGAAAGGTGTGAAAAGTGTTTCTATTGAAGTA
AATGGCAAAGCAAATCTTATAGATGAAAAGGGCGGAAAGTTAATAAAACCTGTAGATCGTCCAGAAAACGTGAATACAGG
TAGTTTTTAA

Upstream 100 bases:

>100_bases
AAATCAGGGGTTTTTTGTTTATAGGGAGCACAGCTTGTTCTAAAAAGAGAAACAGCTCGTATACATAATAGTACAAACTT
AGATTTTAGGGGGGGATGGC

Downstream 100 bases:

>100_bases
TCGCTAATAATTTGATATACTTAAGTAAGAAAGAGGAATTGCTTTTTGGGTTCCTCTTCTTTTATTGTATACATATCATA
CATTTAAATTTGGCTATACT

Product: germination protein gerM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MPKSTFKWVVGATVSAVLLTGCGFINQEKATEQIDPPKQVTYTEGGKKEVFKKDKQAQTVNRELYLVDKNGYVVPQTLAI
PTPKANEVIQQTLEYLVKDGPVTNLLPNGFRAVIPANTSMTLDLKKDGTAVIDFSKEMKNYAKEEERQIVESIAWTLTQF
KEVKQVQFQINGEKLAKMPVGGTPLGDGVSRANGINFDDEQVADVTNTKPVTLYFMAQNNNKQQYYVPVTRRVVEGKEND
YAAIVDELVKGPIHQSLLNDFNPGVKLITNPKLQDGNLTLNFNENIFINPDKNMISNYVLKSLVLSLTEKKGVKSVSIEV
NGKANLIDEKGGKLIKPVDRPENVNTGSF

Sequences:

>Translated_349_residues
MPKSTFKWVVGATVSAVLLTGCGFINQEKATEQIDPPKQVTYTEGGKKEVFKKDKQAQTVNRELYLVDKNGYVVPQTLAI
PTPKANEVIQQTLEYLVKDGPVTNLLPNGFRAVIPANTSMTLDLKKDGTAVIDFSKEMKNYAKEEERQIVESIAWTLTQF
KEVKQVQFQINGEKLAKMPVGGTPLGDGVSRANGINFDDEQVADVTNTKPVTLYFMAQNNNKQQYYVPVTRRVVEGKEND
YAAIVDELVKGPIHQSLLNDFNPGVKLITNPKLQDGNLTLNFNENIFINPDKNMISNYVLKSLVLSLTEKKGVKSVSIEV
NGKANLIDEKGGKLIKPVDRPENVNTGSF
>Mature_348_residues
PKSTFKWVVGATVSAVLLTGCGFINQEKATEQIDPPKQVTYTEGGKKEVFKKDKQAQTVNRELYLVDKNGYVVPQTLAIP
TPKANEVIQQTLEYLVKDGPVTNLLPNGFRAVIPANTSMTLDLKKDGTAVIDFSKEMKNYAKEEERQIVESIAWTLTQFK
EVKQVQFQINGEKLAKMPVGGTPLGDGVSRANGINFDDEQVADVTNTKPVTLYFMAQNNNKQQYYVPVTRRVVEGKENDY
AAIVDELVKGPIHQSLLNDFNPGVKLITNPKLQDGNLTLNFNENIFINPDKNMISNYVLKSLVLSLTEKKGVKSVSIEVN
GKANLIDEKGGKLIKPVDRPENVNTGSF

Specific function: Unknown. Affects both sporulation and germination [H]

COG id: COG5401

COG function: function code R; Spore germination protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019606 [H]

Pfam domain/function: PF10646 Germane [H]

EC number: NA

Molecular weight: Translated: 38710; Mature: 38579

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSTFKWVVGATVSAVLLTGCGFINQEKATEQIDPPKQVTYTEGGKKEVFKKDKQAQTV
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHC
NRELYLVDKNGYVVPQTLAIPTPKANEVIQQTLEYLVKDGPVTNLLPNGFRAVIPANTSM
CCEEEEECCCCEEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEE
TLDLKKDGTAVIDFSKEMKNYAKEEERQIVESIAWTLTQFKEVKQVQFQINGEKLAKMPV
EEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHEEECCC
GGTPLGDGVSRANGINFDDEQVADVTNTKPVTLYFMAQNNNKQQYYVPVTRRVVEGKEND
CCCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCC
YAAIVDELVKGPIHQSLLNDFNPGVKLITNPKLQDGNLTLNFNENIFINPDKNMISNYVL
HHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCEEEECCCHHHHHHHHH
KSLVLSLTEKKGVKSVSIEVNGKANLIDEKGGKLIKPVDRPENVNTGSF
HHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PKSTFKWVVGATVSAVLLTGCGFINQEKATEQIDPPKQVTYTEGGKKEVFKKDKQAQTV
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHC
NRELYLVDKNGYVVPQTLAIPTPKANEVIQQTLEYLVKDGPVTNLLPNGFRAVIPANTSM
CCEEEEECCCCEEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEE
TLDLKKDGTAVIDFSKEMKNYAKEEERQIVESIAWTLTQFKEVKQVQFQINGEKLAKMPV
EEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHEEECCC
GGTPLGDGVSRANGINFDDEQVADVTNTKPVTLYFMAQNNNKQQYYVPVTRRVVEGKEND
CCCCCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCC
YAAIVDELVKGPIHQSLLNDFNPGVKLITNPKLQDGNLTLNFNENIFINPDKNMISNYVL
HHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCEEEECCCHHHHHHHHH
KSLVLSLTEKKGVKSVSIEVNGKANLIDEKGGKLIKPVDRPENVNTGSF
HHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377; 2846748 [H]