Click here to switch to the map view.

The map label for this gene is ysoA [H]

Identifier: 49187366

GI number: 49187366

Start: 4284728

End: 4285726

Strand: Reverse

Name: ysoA [H]

Synonym: BAS4371

Alternate gene names: 49187366

Gene position: 4285726-4284728 (Counterclockwise)

Preceding gene: 49187367

Following gene: 49187365

Centisome position: 81.97

GC content: 34.13

Gene sequence:

>999_bases
ATGGATAAAAAAGAAAATACGGTCGTATTGTTTCCGCAGCTATCAGCGCGCTATATTGATGAAGGTTTTTTAGCACTGAA
AGAGCGGAAATTCGAAGATGCATTGCGCTGCTTTGAAATATTACGTCAGTATAATGCAGAAACGGAACAAACAGAACTAG
CTTCGGTTATTTGTTTGTTAGAATTAAAGCATATGGAAGAAGCGAAAGAGAAATGTGAACAGTTGCTGGAGACAGGAGCT
GTACTATTTGGTGATATTCTTGAAACGTATGTGACAATTTTAGTTCAAACAAATGATTATGAAGGCGTAATTGAAACCGT
TGAAAAAGTTTTGCAAACGAAAGATATAATGCCGGAACAAAAGGAAAAATTAGCACAGCTCGCTTTATTTGCAGAAGGTA
TGTTAAATGAAGTAGATACGTCACTAGTCGATTCGAATTTTGAATTAGATGAATTTACTAATGAAATGTTTGGAGAAAAC
TTTGGGCAAAAGCTAAGAGCGATTCAGCAACTTTCGTTAAAAGACTTAGATCTTGCATTACCTGTTTTAAAGAAATTTTT
AGTAGACGAAAAACAGCACCCTTATTTGAAAACTTCTATTTTATATAAAATGATAGAAAATCAAATAGAAGAAGAGATAG
AGGTAGAAAAGTTTGGAAATACGATCAAGGTAATTCCGGCATTTACAGGTCATAATGAGGAGCAATCCGATAACATTATA
CATACATTATCAAGTCGATTAGAACAAAATTATCCTGATATATTTGATGCGATGGTTACATATTGGAAAGAGTTGCAAAT
TAGCGTTTTCCCATTCGCTCTATTAATGGATAAAGTGGAGATTTGGGCTGCTGTTTTAGAGAGAATTGGTAGAAAGCGTT
TCGGGTTGACTATTGATGAAGAAGAGCTTATGACTGCGTATAATATTGAATTAGAAGAGTTTCATATTGCCTATCAATGG
TTATTACGTATTGAAAGAGAAGGATATTTGCCCGTATAA

Upstream 100 bases:

>100_bases
TTCATATTTCAAACAAAGGGTTTTGAGATGTTGTGTTCTCATTACTCATTTGATATATTTACTTTAAAGATAATTAAAAT
CTAGAAAAAGAGGCGGACGT

Downstream 100 bases:

>100_bases
TTATGAAAAAGAATCGTTCAGTTCTTGAAACGAGCATATTCTATGTTATAATGTAAGGGTTGCAAAAGGCAGAAATCTGC
CTGTTTGTAAGAGAAGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKKENTVVLFPQLSARYIDEGFLALKERKFEDALRCFEILRQYNAETEQTELASVICLLELKHMEEAKEKCEQLLETGA
VLFGDILETYVTILVQTNDYEGVIETVEKVLQTKDIMPEQKEKLAQLALFAEGMLNEVDTSLVDSNFELDEFTNEMFGEN
FGQKLRAIQQLSLKDLDLALPVLKKFLVDEKQHPYLKTSILYKMIENQIEEEIEVEKFGNTIKVIPAFTGHNEEQSDNII
HTLSSRLEQNYPDIFDAMVTYWKELQISVFPFALLMDKVEIWAAVLERIGRKRFGLTIDEEELMTAYNIELEEFHIAYQW
LLRIEREGYLPV

Sequences:

>Translated_332_residues
MDKKENTVVLFPQLSARYIDEGFLALKERKFEDALRCFEILRQYNAETEQTELASVICLLELKHMEEAKEKCEQLLETGA
VLFGDILETYVTILVQTNDYEGVIETVEKVLQTKDIMPEQKEKLAQLALFAEGMLNEVDTSLVDSNFELDEFTNEMFGEN
FGQKLRAIQQLSLKDLDLALPVLKKFLVDEKQHPYLKTSILYKMIENQIEEEIEVEKFGNTIKVIPAFTGHNEEQSDNII
HTLSSRLEQNYPDIFDAMVTYWKELQISVFPFALLMDKVEIWAAVLERIGRKRFGLTIDEEELMTAYNIELEEFHIAYQW
LLRIEREGYLPV
>Mature_332_residues
MDKKENTVVLFPQLSARYIDEGFLALKERKFEDALRCFEILRQYNAETEQTELASVICLLELKHMEEAKEKCEQLLETGA
VLFGDILETYVTILVQTNDYEGVIETVEKVLQTKDIMPEQKEKLAQLALFAEGMLNEVDTSLVDSNFELDEFTNEMFGEN
FGQKLRAIQQLSLKDLDLALPVLKKFLVDEKQHPYLKTSILYKMIENQIEEEIEVEKFGNTIKVIPAFTGHNEEQSDNII
HTLSSRLEQNYPDIFDAMVTYWKELQISVFPFALLMDKVEIWAAVLERIGRKRFGLTIDEEELMTAYNIELEEFHIAYQW
LLRIEREGYLPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006822
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF04733 Coatomer_E [H]

EC number: NA

Molecular weight: Translated: 38730; Mature: 38730

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKENTVVLFPQLSARYIDEGFLALKERKFEDALRCFEILRQYNAETEQTELASVICLL
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ELKHMEEAKEKCEQLLETGAVLFGDILETYVTILVQTNDYEGVIETVEKVLQTKDIMPEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH
KEKLAQLALFAEGMLNEVDTSLVDSNFELDEFTNEMFGENFGQKLRAIQQLSLKDLDLAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLKKFLVDEKQHPYLKTSILYKMIENQIEEEIEVEKFGNTIKVIPAFTGHNEEQSDNII
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
HTLSSRLEQNYPDIFDAMVTYWKELQISVFPFALLMDKVEIWAAVLERIGRKRFGLTIDE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCH
EELMTAYNIELEEFHIAYQWLLRIEREGYLPV
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDKKENTVVLFPQLSARYIDEGFLALKERKFEDALRCFEILRQYNAETEQTELASVICLL
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ELKHMEEAKEKCEQLLETGAVLFGDILETYVTILVQTNDYEGVIETVEKVLQTKDIMPEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH
KEKLAQLALFAEGMLNEVDTSLVDSNFELDEFTNEMFGENFGQKLRAIQQLSLKDLDLAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLKKFLVDEKQHPYLKTSILYKMIENQIEEEIEVEKFGNTIKVIPAFTGHNEEQSDNII
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
HTLSSRLEQNYPDIFDAMVTYWKELQISVFPFALLMDKVEIWAAVLERIGRKRFGLTIDE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCH
EELMTAYNIELEEFHIAYQWLLRIEREGYLPV
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]