Click here to switch to the map view.

The map label for this gene is yrxA [H]

Identifier: 49187324

GI number: 49187324

Start: 4240642

End: 4241184

Strand: Direct

Name: yrxA [H]

Synonym: BAS4329

Alternate gene names: 49187324

Gene position: 4240642-4241184 (Clockwise)

Preceding gene: 49187323

Following gene: 49187325

Centisome position: 81.1

GC content: 36.28

Gene sequence:

>543_bases
ATGAAACAAAATGAACAAAAAAAGATTTTAGGTGAAGAAAGACGACAACTTATCCTTCAGTGGCTTCTAGCTGCAAATGA
ACCGTTATCTGGGAATGAACTATCGAAAAAAACGAACGTAAGTAGACAAGTTATCGTGCAAGATATTTCCCTACTTAAAG
CAAGAAACGAACCAATTATCGCAACTGCCCAAGGATATTTATATTTAAAACCACAAGAGAAACAACAAGCTTTCGAACGC
GTAATTGTATGCCAACATAAACCAGCAGAAGTACGTCAAGAACTTACAATGCTTGTTGACCACGGCGTTACGATTAAAGA
TGTAAAAGTTGAGCATCCTGTATACGGTGACTTAACAGCATCCATCATGGTAAGTAATCGCTTTGATGTAGAGCAATATT
TACAAAAAATCGAAAATACAAACGCTTCCTATCTATCGCAACTAACAGATGGTATTCACTTACATACAATTGAAGCGGAT
TCTAAAGAAAAATTAGACGCTGCTTGCGAGGCTTTAGATAAAGCAGGATTTCTCGTTTATTAA

Upstream 100 bases:

>100_bases
GTTTCTCTTTCGGACAACAAACAACGAAAGATCAAATTGATACTACTATTCATGCACTACACACAATTGGAAATCAATTT
TATAGAGGTGTTAAATGATA

Downstream 100 bases:

>100_bases
TGTAAAGCACAGAGTTTTTTTATCATTCTCTGTGCTTTTTTAATGATATAATATTGTAATCAATTGTAAAGGAGATCAAA
GATGGGAATTGAACTCGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKQNEQKKILGEERRQLILQWLLAANEPLSGNELSKKTNVSRQVIVQDISLLKARNEPIIATAQGYLYLKPQEKQQAFER
VIVCQHKPAEVRQELTMLVDHGVTIKDVKVEHPVYGDLTASIMVSNRFDVEQYLQKIENTNASYLSQLTDGIHLHTIEAD
SKEKLDAACEALDKAGFLVY

Sequences:

>Translated_180_residues
MKQNEQKKILGEERRQLILQWLLAANEPLSGNELSKKTNVSRQVIVQDISLLKARNEPIIATAQGYLYLKPQEKQQAFER
VIVCQHKPAEVRQELTMLVDHGVTIKDVKVEHPVYGDLTASIMVSNRFDVEQYLQKIENTNASYLSQLTDGIHLHTIEAD
SKEKLDAACEALDKAGFLVY
>Mature_180_residues
MKQNEQKKILGEERRQLILQWLLAANEPLSGNELSKKTNVSRQVIVQDISLLKARNEPIIATAQGYLYLKPQEKQQAFER
VIVCQHKPAEVRQELTMLVDHGVTIKDVKVEHPVYGDLTASIMVSNRFDVEQYLQKIENTNASYLSQLTDGIHLHTIEAD
SKEKLDAACEALDKAGFLVY

Specific function: Unknown

COG id: COG1827

COG function: function code R; Predicted small molecule binding protein (contains 3H domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004173
- InterPro:   IPR013196
- InterPro:   IPR011991
- ProDom:   PD469575 [H]

Pfam domain/function: PF02829 3H; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 20458; Mature: 20458

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNEQKKILGEERRQLILQWLLAANEPLSGNELSKKTNVSRQVIVQDISLLKARNEPII
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCEE
ATAQGYLYLKPQEKQQAFERVIVCQHKPAEVRQELTMLVDHGVTIKDVKVEHPVYGDLTA
EEECCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEE
SIMVSNRFDVEQYLQKIENTNASYLSQLTDGIHLHTIEADSKEKLDAACEALDKAGFLVY
EEEECCCCCHHHHHHHHHCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKQNEQKKILGEERRQLILQWLLAANEPLSGNELSKKTNVSRQVIVQDISLLKARNEPII
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCEE
ATAQGYLYLKPQEKQQAFERVIVCQHKPAEVRQELTMLVDHGVTIKDVKVEHPVYGDLTA
EEECCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEE
SIMVSNRFDVEQYLQKIENTNASYLSQLTDGIHLHTIEADSKEKLDAACEALDKAGFLVY
EEEECCCCCHHHHHHHHHCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444804; 9384377 [H]