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The map label for this gene is ycdB [H]

Identifier: 49187235

GI number: 49187235

Start: 4152169

End: 4153662

Strand: Reverse

Name: ycdB [H]

Synonym: BAS4239

Alternate gene names: 49187235

Gene position: 4153662-4152169 (Counterclockwise)

Preceding gene: 49187236

Following gene: 49187232

Centisome position: 79.44

GC content: 33.67

Gene sequence:

>1494_bases
ATGAATCAAAAAGATAAAGAAAGAAAAGAGCAAGTGGTTCATATTATTAACATTCCAGATGATTATAGGCTTGTTGTAGA
TGATCAAGAAGGTGTGGATGACCCATATCATCTATTATGGTGGGAGCATAAAGCGGATGAGGAGAGAACAATACAGATTA
CGTTGAATAGACATACTGGTAGTTTAATTGACTTTAGGATAGAGGATGAAAAAGCTTTTTCGAGCAGTGAGAAAGCGATA
GAGGACAATCAAGCAAGAGAGATTGCAAATACATTCTTAAAAAAATATACAAAAGAAGGCTCTGAATTTTATACATATGT
AATTGTTAAGGGTGACAAGCACGGTTGGAAAGAAGTAAATTATATGCAAGAAGTGAATGGCTATCCATTGCCGAATACAG
GGTGTGTTGTGCAAGTTCATCCTTCAGGAAATGTTGTGGATTTCCATTACAATGGACAAAAAGCGATAGAGAAAAAACCA
TCATGGCCAAATGAAATTGTTGAGGAGAACGTCGTTTTAGAAAATTTGAAAGCTAGACAAGATATGAGACTTGTATTTGT
AGATTTAACATACTCTTCATGTGGGTATGAAAACAGGGAAGAAGTAAAAGGGTACCATCTTGTATATGAACCAGAGCCTA
GTCATGCATGTATTGATGCAAGTACAGGTAAAGATTTATATGGGCCAGAACATTATAAATTACCGCCAACAGTAGTTGTT
GAAAAAATAGAAGAAGGTAACCGGCAAGATGACATATTCGAATTATTTGACTGGGATAAAGAAAGTTTTGCAAAAGTAGA
TGAGACGGAAAATGATAATGAAATAAGGATGAAATTTGTTTTGAAGGAGGAATTACAAAAACAGAAAGAAGAAAAGAATC
CATATTTAATGAATGAATTCTTTAAAAAGCATTTACCGATGCTGAAATATAATAATTTAGTTAGCGTTACAATTGATAAA
TTAACCAATGAATTAACTGGTTTTATAAAATTGACAGATGATAAAGAAGTAAAGCAAATACTGCCTAGAGAGGAATGTTT
ACAAAAAGCACTTCAATTTTTGGAACAAGTTATTCCAGATATCACACAATATCTGCGTCTTTGGGGGGAACGTGAAGAAG
CTGAAGATGGGATTGAAAGATTTATTTTTTCTCTATATATAAATGATATTCCGGCAGAGTATAACCAATTTATAATTAAC
ATCAATGCGGAAAACGGTGCTGTGATGCACTACTCTGGAGAGTCTAGCAACCTTATAAAAAAATTACTTACATACGAAAC
AACACCAAAAGTAACGAAAGAAGAAGCGTTAGAAATATACAGAGATGCTATCCGAGTTAAATTAGAATGGTCTATAGATC
ATGATGTAGAGGAAACGGTATATCAATTGCTGTATAAACAAACAACGTGTGAAAATTATAAAGAATTCTTCGACGGTAGT
CGAGAAGTTCGTTATATTGATGCGCATACTGGTGAGAAAATTTGGAGCAAGTAA

Upstream 100 bases:

>100_bases
CGAGTAACGTTACATCGTGAAACGAAGTAGAAGACTAGAGATATCTCTAGTCTTTTTTTGTTATAATTACCTTAAATTTG
TAATAAAAGGGAGCGGTATG

Downstream 100 bases:

>100_bases
AATAAAAAGAGTTATTTTTCAAAGAAAATAACTCTTTTTATTTTTATAATTTGCCTGTTCGTTTTTCAAATGTAAATGTG
ATAGGAAGGTTGGAAGGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCGYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILPREECLQKALQFLEQVIPDITQYLRLWGEREEAEDGIERFIFSLYINDIPAEYNQFIIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK

Sequences:

>Translated_497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCGYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILPREECLQKALQFLEQVIPDITQYLRLWGEREEAEDGIERFIFSLYINDIPAEYNQFIIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK
>Mature_497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCGYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILPREECLQKALQFLEQVIPDITQYLRLWGEREEAEDGIERFIFSLYINDIPAEYNQFIIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycdC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 58537; Mature: 58537

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTG
CCCCHHHHHHHEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC
SLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVN
CEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHH
YMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKPSWPNEIVEENVVLENLKARQ
HHHHCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
DMRLVFVDLTYSSCGYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
CCEEEEEEEEEHHCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEF
HHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
FKKHLPMLKYNNLVSVTIDKLTNELTGFIKLTDDKEVKQILPREECLQKALQFLEQVIPD
HHHCCCCEECCCEEEEEHHHHHHHHEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHH
ITQYLRLWGEREEAEDGIERFIFSLYINDIPAEYNQFIININAENGAVMHYSGESSNLIK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCHHHHH
KLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
HHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
REVRYIDAHTGEKIWSK
CEEEEEECCCCCHHHCC
>Mature Secondary Structure
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTG
CCCCHHHHHHHEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC
SLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVN
CEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHH
YMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKPSWPNEIVEENVVLENLKARQ
HHHHCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
DMRLVFVDLTYSSCGYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
CCEEEEEEEEEHHCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEF
HHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
FKKHLPMLKYNNLVSVTIDKLTNELTGFIKLTDDKEVKQILPREECLQKALQFLEQVIPD
HHHCCCCEECCCEEEEEHHHHHHHHEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHH
ITQYLRLWGEREEAEDGIERFIFSLYINDIPAEYNQFIININAENGAVMHYSGESSNLIK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCHHHHH
KLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
HHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
REVRYIDAHTGEKIWSK
CEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]