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The map label for this gene is psd

Identifier: 49187231

GI number: 49187231

Start: 4149257

End: 4150045

Strand: Reverse

Name: psd

Synonym: BAS4235

Alternate gene names: 49187231

Gene position: 4150045-4149257 (Counterclockwise)

Preceding gene: 49187232

Following gene: 49187230

Centisome position: 79.37

GC content: 36.88

Gene sequence:

>789_bases
TTGCGACGTACATTATATCGACTTATGATCGAACTTACAAATGGTCGTTTTACTTCTTATACATTACGTAAATTTGCACA
ATCTCGTTTGAGCTCTATCATTATTCCATCGTATGCGAAAGTGTTTCAAATTAATCAAGATGAGATGGAAAAGGGTTTGA
AGGAATATAGAACATTGCATGAATTATTTACACGTAAGCTAAAAGAAGGAAAGCGTAGTATTGATACAGATGCATCGAGT
ATCGTTAGTCCTGTTGATGGTGTTTTTGCTGATCACGGTCCTATTGAGGACACAAAAACATTTGATATTAAAGGAAAGCG
TTATTCGATTGTGGATATGCTAGGTAATGAAGAACGTGCACAGCGATATGCAGGTGGTACATATATGGTTATTTATTTAA
GCCCAAGTCATTATCATCGTATTCATAGTCCGCTTTCTGGTTCTGTGACTGAAAGATTTGTACTCGGTAGAAAATCATAT
CCGGTAAATGCAGCTGGTATGGAATACGGGAAAGAACCATTGTCAAAAAACTATCGCTCCGTTACAGAAGTGAATAGTGA
CGGTGAACATATGGCGCTTGTAAAAGTAGGAGCTATGTTTGTAAATAGTATTGAGCTGCTGCATGAAAGAGACACTGTTC
AAAAAGGTGAAGAAATGGCATACTTTACATTCGGTTCAACAGTTGTGTTATTGTTTGAAAAAGATATGATAGAAGTAGTG
CAAGAATTGAAGAGTGGACAAGAGCTTCGCCTTGGTGAAAAAATTGCTACTCGATTGGCTCATAAGTAA

Upstream 100 bases:

>100_bases
TTCTATATGATATGTGGGAATAAGAACTAATTTTACATATGATATAGAAGGAAAAGAAGGGGAAGCTAAAGTTATAAGAC
TGATTAGGAGGTTCCGCAAT

Downstream 100 bases:

>100_bases
AAAAGATTTTATAACTGTAAGCAAGATTTATGGACAAAGATGCGTAATGATGAAATTCCCTAGATGGGAGTATTTGTTTA
TTCGAGAGCCATCGCAGGAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRRTLYRLMIELTNGRFTSYTLRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Sequences:

>Translated_262_residues
MRRTLYRLMIELTNGRFTSYTLRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK
>Mature_262_residues
MRRTLYRLMIELTNGRFTSYTLRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790604, Length=280, Percent_Identity=29.6428571428571, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71980843, Length=247, Percent_Identity=28.7449392712551, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71980840, Length=247, Percent_Identity=28.7449392712551, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321609, Length=201, Percent_Identity=28.8557213930348, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=27.0700636942675, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=27.0700636942675, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=27.0700636942675, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BACAA (C3P929)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868628.1
- EnsemblBacteria:   EBBACT00000126260
- GeneID:   7853342
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4583
- GeneTree:   EBGT00050000001988
- ProtClustDB:   PRK03140
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 29907; Mature: 29907

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLYRLMIELTNGRFTSYTLRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLH
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRRTLYRLMIELTNGRFTSYTLRKFAQSRLSSIIIPSYAKVFQINQDEMEKGLKEYRTLH
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADHGPIEDTKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA