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The map label for this gene is nusB

Identifier: 49187084

GI number: 49187084

Start: 4020964

End: 4021356

Strand: Reverse

Name: nusB

Synonym: BAS4086

Alternate gene names: 49187084

Gene position: 4021356-4020964 (Counterclockwise)

Preceding gene: 49187085

Following gene: 49187083

Centisome position: 76.91

GC content: 35.37

Gene sequence:

>393_bases
ATGAAACGTAGGACGGCTAGAGAAAGAGCGATGCAAGCATTATACCAAATGGATATTACAGGTGAGTTAGAACCGAAAGT
AGCGGTGGAAAACACGCTAGATGAAGGTGAAGAAACAAATGAGTTTCTAGAATCACTTGTAGTAGGTTTTGTAGAAAATA
AAGAAGTAATTGATGAAGCGATTCGTCAAAACTTAAAAAAATGGAAGCTTGAGCGTATTAGTATTGTTGATCGCAGTATT
TTACGTGTAGCTGTGTATGAAATGAAATACATGGAAGAAATTCCACACAACGTAACAATTAACGAGGCAATTGAAATTGC
TAAAACATTTGGGGATGAGGAATCTCGTCGTTTTATTAACGGCGTTTTATCTAATATAAAAGATACACTGTAA

Upstream 100 bases:

>100_bases
AAATCAATGAAAACTGTAAGAGTAAGTGAATTGACGGCTTATAAATTATAATAATATAACAAATTATAAGGAAAGACTTG
AAGCATAAAGGAGAGTTACA

Downstream 100 bases:

>100_bases
TTTCTTTAAGGGGGAATCTTAAAATGGTAGCAGTAATCATCAAAGGAAATGAAGTTGCGGAGAAAAAACGAGCACAATTA
AAAGAAGAAGTTGTGAAGTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERISIVDRSI
LRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFINGVLSNIKDTL

Sequences:

>Translated_130_residues
MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERISIVDRSI
LRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFINGVLSNIKDTL
>Mature_130_residues
MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERISIVDRSI
LRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFINGVLSNIKDTL

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BACAA (C3P7W1)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868476.1
- ProteinModelPortal:   C3P7W1
- SMR:   C3P7W1
- EnsemblBacteria:   EBBACT00000128395
- GeneID:   7849114
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4423
- GeneTree:   EBGT00070000032128
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15133; Mature: 15133

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEA
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH
IRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHH
GVLSNIKDTL
HHHHHHHHCC
>Mature Secondary Structure
MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETNEFLESLVVGFVENKEVIDEA
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH
IRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHH
GVLSNIKDTL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA