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The map label for this gene is xseB

Identifier: 49187081

GI number: 49187081

Start: 4018475

End: 4018705

Strand: Reverse

Name: xseB

Synonym: BAS4083

Alternate gene names: 49187081

Gene position: 4018705-4018475 (Counterclockwise)

Preceding gene: 49187082

Following gene: 49187080

Centisome position: 76.86

GC content: 37.66

Gene sequence:

>231_bases
ATGGAAAATAAATTAAGCTTTGAAGAGGCAATTTCGCAACTTGAGCATCTCGTTTCTAAGCTAGAGCAAGGTGACGTACC
TTTAGAAGAAGCAATTTCTTATTTTAAAGAGGGTATGGAATTATCTAAGCTTTGTGATGAGAAGTTGAAGAACGTACAAG
AACAAATGGCAGTTATTCTTGGGGAAGATGGAGAGCTTGAACCGTTTACTGCTTTAGGAGATGAAGCATAG

Upstream 100 bases:

>100_bases
AGTGTGAAAGATGTCAGCCTTGGAGATGCTGTTTCAGTTCAATTACAAGATGGAATACTAGATTGTAGCGTATCAGGCAT
AGAGGAGCGTGAATTGAATA

Downstream 100 bases:

>100_bases
TGACAATTGCTTTTGATACTTTTTTAAAAGAAAGTAAAACTTTTGTAGAAGAGAAGCTTGTAAGCTATGCAAATGAATTA
CAATGTCCAAATGTACTTCG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDGELEPFTALGDEA

Sequences:

>Translated_76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDGELEPFTALGDEA
>Mature_76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDGELEPFTALGDEA

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=67, Percent_Identity=43.2835820895522, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_BACAA (C3P7V8)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868473.1
- ProteinModelPortal:   C3P7V8
- SMR:   C3P7V8
- EnsemblBacteria:   EBBACT00000128178
- GeneID:   7847979
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4420
- GeneTree:   EBGT00050000002908
- ProtClustDB:   PRK14063
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8516; Mature: 8516

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVIL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GEDGELEPFTALGDEA
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVIL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GEDGELEPFTALGDEA
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA