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The map label for this gene is yqxC [H]

Identifier: 49187078

GI number: 49187078

Start: 4014548

End: 4015387

Strand: Reverse

Name: yqxC [H]

Synonym: BAS4080

Alternate gene names: 49187078

Gene position: 4015387-4014548 (Counterclockwise)

Preceding gene: 49187079

Following gene: 49187077

Centisome position: 76.8

GC content: 39.64

Gene sequence:

>840_bases
ATGAGTGCAAAAAAAGAAAGAGTAGATGTACTATTAGTAGAGCGAGGACTTATAGAAACACGTGAGAAAGCAAAACGCGC
CATTATGGCGGGACTTGTATATGCGAATGAGATGAGACTGGATAAGCCAGGAGAGAAAATCCCACAAGATACAGAGATTA
CGGTGAAGGGGCAAGTTATGCCCTATGTAAGCCGTGGTGGTTATAAACTTGAAAAGGCATTAGAGACATTTCATCTTGAT
TTACAAGATAAAGTTATGATAGATATTGGTTCATCAACTGGTGGCTTTACCGATTGTGCGCTTCAAAATGGAGCGAAATT
ATCTTATGCATTAGATGTAGGGTATAATCAACTTGCGTGGAAATTGCGTCAAGATGAGCGTGTTGTCGTAATGGAACGAA
CAAACTTCCGTTACGTAACACCAGCAGACTTAGAACGTGGTTTACCACAATTTGCTAGTATCGATGTTTCATTTATATCA
TTAAAGCTTATATTACCAGTGTTAAAAACAATGCTTATGCCGAATGGGGATGTAGCAGCGTTAATTAAACCGCAGTTTGA
AGCTGGAAGAGAGCAAGTTGGTAAAAAGGGTATCGTTCGTGATCGAAAAGTACATGAGGCTGTCGTAGAAATGATTGTCG
ACTTTGCTATAAAAGAAGGATACGATGTAGAAGGTTTAACATTCTCACCAATTACGGGCGGGGATGGTAACATTGAATTT
TTAATTCATCTGAAATGGCATGGTGAACGTGAGAATGGCGAAAATCATTCTCCAGTTTCTGTTGAGCAAGTAGTCACAGA
GGCCCATGATGTCCTAAAACAAAAAGGGAAAGGGGAATAA

Upstream 100 bases:

>100_bases
TAGTGTAACAAAATTATTAGAAGAAATTGGTTTAACGACAGATGCTGTTGTAGACCGTATTCATACAATGATTCCATCAA
AACAAAAAAGGGCGTAACAA

Downstream 100 bases:

>100_bases
CATATGTTGTTCCTCTTTTTGTTGTAATTGTATAATGATTGTAAAAACAATTGTGTACAAGTAACGAATTATAAGTTAAC
ATAAATAAGTGAAGTATACC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVMPYVSRGGYKLEKALETFHLD
LQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFIS
LKLILPVLKTMLMPNGDVAALIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFAIKEGYDVEGLTFSPITGGDGNIEF
LIHLKWHGERENGENHSPVSVEQVVTEAHDVLKQKGKGE

Sequences:

>Translated_279_residues
MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVMPYVSRGGYKLEKALETFHLD
LQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFIS
LKLILPVLKTMLMPNGDVAALIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFAIKEGYDVEGLTFSPITGGDGNIEF
LIHLKWHGERENGENHSPVSVEQVVTEAHDVLKQKGKGE
>Mature_278_residues
SAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVMPYVSRGGYKLEKALETFHLDL
QDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISL
KLILPVLKTMLMPNGDVAALIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFAIKEGYDVEGLTFSPITGGDGNIEFL
IHLKWHGERENGENHSPVSVEQVVTEAHDVLKQKGKGE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 31138; Mature: 31007

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVM
CCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEE
PYVSRGGYKLEKALETFHLDLQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAW
EEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLMPNGDVAA
EECCCCEEEEEEECCEEEECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFAIKEGYDVEGLTFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEE
LIHLKWHGERENGENHSPVSVEQVVTEAHDVLKQKGKGE
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVM
CCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEE
PYVSRGGYKLEKALETFHLDLQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAW
EEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLMPNGDVAA
EECCCCEEEEEEECCEEEECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFAIKEGYDVEGLTFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEE
LIHLKWHGERENGENHSPVSVEQVVTEAHDVLKQKGKGE
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]