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The map label for this gene is yjdF [H]

Identifier: 49187060

GI number: 49187060

Start: 3993156

End: 3993563

Strand: Reverse

Name: yjdF [H]

Synonym: BAS4062

Alternate gene names: 49187060

Gene position: 3993563-3993156 (Counterclockwise)

Preceding gene: 49187061

Following gene: 49187059

Centisome position: 76.38

GC content: 37.01

Gene sequence:

>408_bases
ATGGATTTGACAGTATATCACGATGGCCAATTTTTTGTTGGAATCATTACATGTAAAGAAAAAGGGAAGTTGTATGGAGC
GAGGTATATTTTTGGAGCGGAACCTTCAGACGAAGAAGTGCTTATATTTGTGAACGGTTCAATGTTAGCGTATTTTCAGC
AATTTGCAAAATGTGGCGTGGAAGTGAAAGAAAAACAGCGTCCCAAAAATATAAAGCGGATCATACGACAAGCAGTAAAA
GAAGTAAATGTAAGCCGCTTTACTAAGGCGCAAGAGGCAATTAGCTTATCTTATGAACTGCATAAACAAGAAAAGAAAGT
GCAATCTAAGGAGAAGCGAGAGGCTGAAAAACAAAGAAGACGTTTAATCAAAGTACAAAAAGCAAAGCAAAAACATCGTG
GTCATTAA

Upstream 100 bases:

>100_bases
AACACAGTACTGGTTGGTAGTCCAGACGCATGATTTCATGTCAGTAACCTTCCCCTCCGGGATGTCCCGTATTTCTAATT
TTTTAAAGGAGGGGCTGTCA

Downstream 100 bases:

>100_bases
GAAAAGGTGTTAGAGCAGGGCTCTAACACCTTTTCTATGCTCAAATACAAGTAAACTTACTTGTATTTCATAAACATTAA
CTGGTAAGATACAAATAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGVEVKEKQRPKNIKRIIRQAVK
EVNVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEKQRRRLIKVQKAKQKHRGH

Sequences:

>Translated_135_residues
MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGVEVKEKQRPKNIKRIIRQAVK
EVNVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEKQRRRLIKVQKAKQKHRGH
>Mature_135_residues
MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGVEVKEKQRPKNIKRIIRQAVK
EVNVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEKQRRRLIKVQKAKQKHRGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016787 [H]

Pfam domain/function: PF11208 DUF2992 [H]

EC number: NA

Molecular weight: Translated: 15800; Mature: 15800

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGV
CCEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCCC
EVKEKQRPKNIKRIIRQAVKEVNVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEKQRR
CCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLIKVQKAKQKHRGH
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGV
CCEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCCC
EVKEKQRPKNIKRIIRQAVKEVNVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEKQRR
CCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLIKVQKAKQKHRGH
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]