Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is ribD [H]
Identifier: 49187016
GI number: 49187016
Start: 3954840
End: 3955952
Strand: Direct
Name: ribD [H]
Synonym: BAS4018
Alternate gene names: 49187016
Gene position: 3954840-3955952 (Clockwise)
Preceding gene: 49187014
Following gene: 49187017
Centisome position: 75.64
GC content: 39.44
Gene sequence:
>1113_bases ATGACAGATCAAGAATATATGAGGATTGCCCTGCAATTAGCAGAAGGAACATGTGGGCAAACAAGTCCAAATCCTATGGT TGGTGCTGTTGTTGTAAAAGACGGAAACATCGTCGGTATGGGGGCTCATTTACGTGCTGGTGAAGAACACGCAGAAGTTC ATGCTCTTCATATGGCTGGTGACAAAGCAAAAGGAGCCACCGTGTATGTAACCCTTGAACCATGTAGCCATTTTGGAAAA ACACCACCTTGCTGTGAATTGCTCATCAAAAAAGAAGTCAAACGGGTTGTAATTGCTACTCTTGATTGCAATCCGCTCGT TTCTGGTAATGGAAAAAGAAAATTAGAGGAAGCTGGCATCGAAGTAACTACCGGTGTTCTGGAAGCAGAAGCAGTTTTAT TAAATCGCTACTTTTTTCACTACATGAAAACGAAACGTCCATTTGTAACAATAAAAACAGCGATGAGCTTAGACGGAAAA ACAGCAACTGTTACTGGTGAAAGCAAGTGGATTACAGGTGAAAAAGCACGAGCTGATGTTCACCAATACCGCCATACACA TGATGCGATTCTCGTTGGAGTGAATACAGTTATAGCTGATAATCCGCATTTAACAACAAGAATTCCTAACGGGGGGCAAA ATCCTATACGAGTTATTTTAGATACCCATTTACGAACGCCACCATCTTCTCATGTCATAACAGATTCTTTAGCACCGACA TGGATTATAGTTGGTACGGATGTAAATCAAGAGAAAATAGCTTCTTATGAATCTAAAAATATAGCTATATTCCAAATGAA AACGAAGCAGATTGAAATACAGGATGTTTTACACTTACTCGGCGAAAAACAAATTCTTTCTCTTTTCGTCGAAGGGGGGC AAACAGTTCATGCAAGCTTCTTACAAACAAAGTATTTCAATGAAATTGTAACTTATATAAGCCCAAAATTAATTGGTGGC AGTAAGGCCCCTACTTTATTTGGCGGAAATGGTTTTTCAACATTACAAGATGCGCTTTCCTTGGAAATTCAAGAGATGAA ACAAATTGGTGATGATATAAAAATCGTTGCGCATGCCCGAAACGAGGTGACGAAATGTTTACAGGAATTGTAG
Upstream 100 bases:
>100_bases CTTTCGTATTCGAACTATATTTCTAGAAATCACGTCTCCCAAACCCCAAGGATATTAAAATCCTTGGGGTTTTTTGTTTT TTTTAGGAGAGGTGAAGAAA
Downstream 100 bases:
>100_bases AAGAATTAGGAACGATAACAAATATGCAACAAAGCGGAGAAGCAATGAAGTTAACGATACATGCCAATAAAATTTTATCA GATGTTCACTTAGGTGATAG
Product: riboflavin biosynthesis protein RibD
Products: NA
Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDKAKGATVYVTLEPCSHFGK TPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGK TATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPT WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGG SKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL
Sequences:
>Translated_370_residues MTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDKAKGATVYVTLEPCSHFGK TPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGK TATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPT WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGG SKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL >Mature_369_residues TDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDKAKGATVYVTLEPCSHFGKT PPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKT ATVTGESKWITGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGS KAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL
Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the HTP reductase family [H]
Homologues:
Organism=Escherichia coli, GI1786616, Length=365, Percent_Identity=42.4657534246575, Blast_Score=278, Evalue=6e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 - InterPro: IPR004794 - InterPro: IPR011549 - InterPro: IPR002734 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]
EC number: =3.5.4.26; =1.1.1.193 [H]
Molecular weight: Translated: 40483; Mature: 40352
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAG CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCHHEEEEEEECC DKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGI CCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHCCC EVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADV EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEECCCHHHHHH HQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPT HHHHCCCCEEEEEEEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEECCCCCE WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF EEEEECCCCHHHHHHCCCCCEEEEEEECCEEEHHHHHHHHCCHHHHHHHHCCCCEEEHHH LQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHAR HHHHHHHHHHHHHCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHH NEVTKCLQEL HHHHHHHHHC >Mature Secondary Structure TDQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAG CCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCHHEEEEEEECC DKAKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGI CCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHCCC EVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADV EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEECCCHHHHHH HQYRHTHDAILVGVNTVIADNPHLTTRIPNGGQNPIRVILDTHLRTPPSSHVITDSLAPT HHHHCCCCEEEEEEEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEECCCCCE WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF EEEEECCCCHHHHHHCCCCCEEEEEEECCEEEHHHHHHHHCCHHHHHHHHCCCCEEEHHH LQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHAR HHHHHHHHHHHHHCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHH NEVTKCLQEL HHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 2112225; 9068650 [H]