Click here to switch to the map view.

The map label for this gene is ykfA [H]

Identifier: 49184299

GI number: 49184299

Start: 1316544

End: 1317464

Strand: Reverse

Name: ykfA [H]

Synonym: BAS1282

Alternate gene names: 49184299

Gene position: 1317464-1316544 (Counterclockwise)

Preceding gene: 49184301

Following gene: 49184295

Centisome position: 25.2

GC content: 38.0

Gene sequence:

>921_bases
ATGATATATCCAAATGTATTACAACAAGGTGATACAGTAATGATTATTGCACCGTCCGGCCCACCAACAATTGAAAATGT
ATTAAAAGGTGTAAAGGCATTACAAGAAATGGGTTTATCTGTAGTAATCGGGAAGAGTGTTTATGAGAAATATGGATATT
TAGCTGGAAGGGATCAAGTCCGGCTTGATGATATACATGAAGCATTTTCAAATCATGAAGTAAAGGCCGTTTTCTGTGCA
CGAGGTGGTTACGGTAGCGCTCGTCTCCTCCCTCACATTCAATATGAAATCATTCGGAAAAATCCAAAAATCTTTTGGGG
ATATAGCGATATTACAGCTTTACATACTGCCTTTTCACGTTATGCAAAGCTTATTACTTTTCATGGCCCAATGGTTGAAG
AATTAGGGAAAGGTATAGATTCTCTTTCTTTATCTTCTTTCAACCAACTATTTCATCCGTATTCAACCATTTTATCTGCG
TCAGAATGTATCGTACCTAGCTCTTCCCGTACAATTACAGGTCAATTAGTTGGAGGGAATTTAGCAGTGCTAACGAGCAT
AATTGGCTCACACTACGAGGTACATACAGCCAATAAACTTTTATTACTTGAAGACATTGGGGAAGAACCGTATCGCGTTG
ATCGTATGTTAAATCAACTACTCTTATCTGGAAAGTTCAATGAATGCAGTGGTGTTATTTTTACAAGCTGTCACGACTGT
ACTCCTTCTAAACCATCTCAATCATTGCAAACGATACTATATGAATATTTCGCACCGTATCATATACCTGTCCTATTCGG
TTTACCGATTGGACATATAAGCCCAAACATTGGAATTCCTCTTGGAGCTACAGCTACAATAAGTACACATAATAAAACAC
TCTCTATTTCTTCTGGCGTAGCCACCCCGTGTTCAAATTAA

Upstream 100 bases:

>100_bases
TCCCCTTATATCTTCTTTATTTGACAAGCTTTTCCCTTCTTTTACAAGGGTTGAACTTCCTCTCAAGCGAATATATTGAA
AGAGAAGGAGGCTGAAAACA

Downstream 100 bases:

>100_bases
AAAGGAAAAGCGATTACGCTTTTCCTTTTATTTATAATAGTTAAAAATTCGTCCAGATGCGATATCTGCAATTTCTTCGG
GAATAAATGTTTTACTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIYPNVLQQGDTVMIIAPSGPPTIENVLKGVKALQEMGLSVVIGKSVYEKYGYLAGRDQVRLDDIHEAFSNHEVKAVFCA
RGGYGSARLLPHIQYEIIRKNPKIFWGYSDITALHTAFSRYAKLITFHGPMVEELGKGIDSLSLSSFNQLFHPYSTILSA
SECIVPSSSRTITGQLVGGNLAVLTSIIGSHYEVHTANKLLLLEDIGEEPYRVDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATISTHNKTLSISSGVATPCSN

Sequences:

>Translated_306_residues
MIYPNVLQQGDTVMIIAPSGPPTIENVLKGVKALQEMGLSVVIGKSVYEKYGYLAGRDQVRLDDIHEAFSNHEVKAVFCA
RGGYGSARLLPHIQYEIIRKNPKIFWGYSDITALHTAFSRYAKLITFHGPMVEELGKGIDSLSLSSFNQLFHPYSTILSA
SECIVPSSSRTITGQLVGGNLAVLTSIIGSHYEVHTANKLLLLEDIGEEPYRVDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATISTHNKTLSISSGVATPCSN
>Mature_306_residues
MIYPNVLQQGDTVMIIAPSGPPTIENVLKGVKALQEMGLSVVIGKSVYEKYGYLAGRDQVRLDDIHEAFSNHEVKAVFCA
RGGYGSARLLPHIQYEIIRKNPKIFWGYSDITALHTAFSRYAKLITFHGPMVEELGKGIDSLSLSSFNQLFHPYSTILSA
SECIVPSSSRTITGQLVGGNLAVLTSIIGSHYEVHTANKLLLLEDIGEEPYRVDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATISTHNKTLSISSGVATPCSN

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=282, Percent_Identity=30.1418439716312, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 33356; Mature: 33356

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYPNVLQQGDTVMIIAPSGPPTIENVLKGVKALQEMGLSVVIGKSVYEKYGYLAGRDQV
CCCCCHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCE
RLDDIHEAFSNHEVKAVFCARGGYGSARLLPHIQYEIIRKNPKIFWGYSDITALHTAFSR
EHHHHHHHHCCCCEEEEEEECCCCCCCHHCHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
YAKLITFHGPMVEELGKGIDSLSLSSFNQLFHPYSTILSASECIVPSSSRTITGQLVGGN
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCH
LAVLTSIIGSHYEVHTANKLLLLEDIGEEPYRVDRMLNQLLLSGKFNECSGVIFTSCHDC
HHHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATISTHNKTLSISSGV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
ATPCSN
CCCCCC
>Mature Secondary Structure
MIYPNVLQQGDTVMIIAPSGPPTIENVLKGVKALQEMGLSVVIGKSVYEKYGYLAGRDQV
CCCCCHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCE
RLDDIHEAFSNHEVKAVFCARGGYGSARLLPHIQYEIIRKNPKIFWGYSDITALHTAFSR
EHHHHHHHHCCCCEEEEEEECCCCCCCHHCHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
YAKLITFHGPMVEELGKGIDSLSLSSFNQLFHPYSTILSASECIVPSSSRTITGQLVGGN
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCH
LAVLTSIIGSHYEVHTANKLLLLEDIGEEPYRVDRMLNQLLLSGKFNECSGVIFTSCHDC
HHHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATISTHNKTLSISSGV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
ATPCSN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]