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The map label for this gene is lrpC [H]

Identifier: 49184295

GI number: 49184295

Start: 1314477

End: 1314929

Strand: Reverse

Name: lrpC [H]

Synonym: BAS1278

Alternate gene names: 49184295

Gene position: 1314929-1314477 (Counterclockwise)

Preceding gene: 49184299

Following gene: 49184294

Centisome position: 25.15

GC content: 34.22

Gene sequence:

>453_bases
ATGCAACTAGATCGTGTTGATCGAAAAATTTTAAATGAATTATATAATGATAGTCGCCTTTCCATGCGCGAATTGGCAAA
ACGAGTAAACTTATCTGCTCCGTCTACTGCAGAACGTGTTCGTAAACTCGAAAGTGAAGGCGTGGTTCAAAAGTACACAA
TCGATATCGATTATAAAAAAGCAGGACTTGTTTTAGATTGTATTTTAGAAATCACTTTAAAAAATGGTGATACAACACGT
ATGCAACAGTTTATTCAGTCCTATCCATCTGCAAGTTTTTGTTACCGAGTAACAGGAAGTTTATGCTACATTGTAAAAAT
CTCTGTTCCTTCACTTGTTGAACTTGAAGAATTTATTAATGATGTTTCTTCATACGCGACGACTGTTTCTCATATCGTAT
TATCAGAAATATCTCTTACTCCTGATATCGAACATATCTTTCCAGAAGATTAA

Upstream 100 bases:

>100_bases
TTATTGTAAAATAAATAAAGTTCTCTTTACATTTCATATGAATCTTAATTTATATTTTTCCTTTACAAAAATTATCATTT
TACTGGAGGTATATTTACAC

Downstream 100 bases:

>100_bases
TTAATTTTTATTCATAAAATATATAAAAACCCCTTACAATAAGAATAAAAATAATATATTATGTATTAAAATACATAAAG
TTCGAGAAAGGGGCTTTACA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MQLDRVDRKILNELYNDSRLSMRELAKRVNLSAPSTAERVRKLESEGVVQKYTIDIDYKKAGLVLDCILEITLKNGDTTR
MQQFIQSYPSASFCYRVTGSLCYIVKISVPSLVELEEFINDVSSYATTVSHIVLSEISLTPDIEHIFPED

Sequences:

>Translated_150_residues
MQLDRVDRKILNELYNDSRLSMRELAKRVNLSAPSTAERVRKLESEGVVQKYTIDIDYKKAGLVLDCILEITLKNGDTTR
MQQFIQSYPSASFCYRVTGSLCYIVKISVPSLVELEEFINDVSSYATTVSHIVLSEISLTPDIEHIFPED
>Mature_150_residues
MQLDRVDRKILNELYNDSRLSMRELAKRVNLSAPSTAERVRKLESEGVVQKYTIDIDYKKAGLVLDCILEITLKNGDTTR
MQQFIQSYPSASFCYRVTGSLCYIVKISVPSLVELEEFINDVSSYATTVSHIVLSEISLTPDIEHIFPED

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=145, Percent_Identity=35.1724137931034, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI87081742, Length=145, Percent_Identity=26.2068965517241, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17083; Mature: 17083

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDRVDRKILNELYNDSRLSMRELAKRVNLSAPSTAERVRKLESEGVVQKYTIDIDYKK
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCH
AGLVLDCILEITLKNGDTTRMQQFIQSYPSASFCYRVTGSLCYIVKISVPSLVELEEFIN
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHHH
DVSSYATTVSHIVLSEISLTPDIEHIFPED
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MQLDRVDRKILNELYNDSRLSMRELAKRVNLSAPSTAERVRKLESEGVVQKYTIDIDYKK
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCH
AGLVLDCILEITLKNGDTTRMQQFIQSYPSASFCYRVTGSLCYIVKISVPSLVELEEFIN
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHHH
DVSSYATTVSHIVLSEISLTPDIEHIFPED
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]