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The map label for this gene is lytR [H]

Identifier: 49183597

GI number: 49183597

Start: 618674

End: 619687

Strand: Reverse

Name: lytR [H]

Synonym: BAS0572

Alternate gene names: 49183597

Gene position: 619687-618674 (Counterclockwise)

Preceding gene: 49183598

Following gene: 49183596

Centisome position: 11.85

GC content: 34.32

Gene sequence:

>1014_bases
ATGAAATCCGATATGAACAAAGATACTCGAGCCAAAAAAGGACGCTCAAAGAAAAAACGTCTACTTTGGTTCCTTCTTAT
TCCATTACTGATTATAGCACTTGGAGCAGGGGGATACTCCTTCCATATATACAGTAAAGCAAAATCAATTTTAAGTAATG
CCTATTCTGAGCTGGGTCGCGGAGATAAATCCAGCAAACGTGAAAAAGCCGTTAAACCTATGACTGACAACATTTCCATA
CTTATTATGGGTGTTGATGAAAGTGATATTAGGGACAAGAATTATGGGAAAGCAACTCGTACAGATGCACTATTACTTGC
CACAATTAATAAAAACGATAAATCTGTTAAACTTGTTAGTATTCCACGTGACTCACGTGTCTACATTAAATCACGTGAGA
AATACGATAAAATTACACATGCGCACGTATTCGGTGGTGTGGACAGCACGATTGATACCGTAGAGAACTTTTTAGATGTT
CCAGTTGACTACTATGTAAAATTCAACTTTAAATCATTTATCAAAATTGTTGATTCCCTTGGTGGTATTACTGTCGATGT
TCCAGTTGAATTCACAGAACAAAATAGTAAAGATGAGGCTGATGCAATTCACCTTAAAAAAGGACGTCAACATTTAAATG
GAGAAGAAGCACTGGCACTAGCTAGAACTCGTCATATCGATAGTGATTATATGCGAGGTCAACGTCAACAACTTGTTTTA
GAAGCTATTGCTGAAAAGGCATTATCTCTTAATTCCATTAATAAAATCGGTGGTCTATTAGACGCTGTTGATAAAGACTT
AAAAACAAATTTAACTTTTGATGATATGATGACAATTGCAAAAAATTCAATGGGTTCAAACTTAAAAATGGACAAATTGC
AAGTAGAAGGTACTGATAAATATATAGGTGGTATTTATTATTACGTTCCAAATGAAAAAAGCGTCAATAATATATCGACA
ACACTACAAGAACATCTCGGTGTTACGAATAAAAATGAACATAAAAAATTATAA

Upstream 100 bases:

>100_bases
ATACATGTACAATCGCTTTTATTTAGCGTACAATATTTTTTATGTATTTAAATGCGCTTCTAGATGTATACACTTTGATA
GTTTTAAAGGAAAAAAAATG

Downstream 100 bases:

>100_bases
TAAAAAGGCTGCTAGAACTTTCTAGACAGCCTTTTTATTATAATTTTCAACATATTTTCCATGCATATTGTGACAAAAAG
AGACAATTATTACAACAGTG

Product: LytR family transcription antiterminator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKSDMNKDTRAKKGRSKKKRLLWFLLIPLLIIALGAGGYSFHIYSKAKSILSNAYSELGRGDKSSKREKAVKPMTDNISI
LIMGVDESDIRDKNYGKATRTDALLLATINKNDKSVKLVSIPRDSRVYIKSREKYDKITHAHVFGGVDSTIDTVENFLDV
PVDYYVKFNFKSFIKIVDSLGGITVDVPVEFTEQNSKDEADAIHLKKGRQHLNGEEALALARTRHIDSDYMRGQRQQLVL
EAIAEKALSLNSINKIGGLLDAVDKDLKTNLTFDDMMTIAKNSMGSNLKMDKLQVEGTDKYIGGIYYYVPNEKSVNNIST
TLQEHLGVTNKNEHKKL

Sequences:

>Translated_337_residues
MKSDMNKDTRAKKGRSKKKRLLWFLLIPLLIIALGAGGYSFHIYSKAKSILSNAYSELGRGDKSSKREKAVKPMTDNISI
LIMGVDESDIRDKNYGKATRTDALLLATINKNDKSVKLVSIPRDSRVYIKSREKYDKITHAHVFGGVDSTIDTVENFLDV
PVDYYVKFNFKSFIKIVDSLGGITVDVPVEFTEQNSKDEADAIHLKKGRQHLNGEEALALARTRHIDSDYMRGQRQQLVL
EAIAEKALSLNSINKIGGLLDAVDKDLKTNLTFDDMMTIAKNSMGSNLKMDKLQVEGTDKYIGGIYYYVPNEKSVNNIST
TLQEHLGVTNKNEHKKL
>Mature_337_residues
MKSDMNKDTRAKKGRSKKKRLLWFLLIPLLIIALGAGGYSFHIYSKAKSILSNAYSELGRGDKSSKREKAVKPMTDNISI
LIMGVDESDIRDKNYGKATRTDALLLATINKNDKSVKLVSIPRDSRVYIKSREKYDKITHAHVFGGVDSTIDTVENFLDV
PVDYYVKFNFKSFIKIVDSLGGITVDVPVEFTEQNSKDEADAIHLKKGRQHLNGEEALALARTRHIDSDYMRGQRQQLVL
EAIAEKALSLNSINKIGGLLDAVDKDLKTNLTFDDMMTIAKNSMGSNLKMDKLQVEGTDKYIGGIYYYVPNEKSVNNIST
TLQEHLGVTNKNEHKKL

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 37839; Mature: 37839

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDMNKDTRAKKGRSKKKRLLWFLLIPLLIIALGAGGYSFHIYSKAKSILSNAYSELGR
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCC
GDKSSKREKAVKPMTDNISILIMGVDESDIRDKNYGKATRTDALLLATINKNDKSVKLVS
CCCCHHHHHHCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEE
IPRDSRVYIKSREKYDKITHAHVFGGVDSTIDTVENFLDVPVDYYVKFNFKSFIKIVDSL
CCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHC
GGITVDVPVEFTEQNSKDEADAIHLKKGRQHLNGEEALALARTRHIDSDYMRGQRQQLVL
CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCHHHHHHH
EAIAEKALSLNSINKIGGLLDAVDKDLKTNLTFDDMMTIAKNSMGSNLKMDKLQVEGTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCC
YIGGIYYYVPNEKSVNNISTTLQEHLGVTNKNEHKKL
EECEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKSDMNKDTRAKKGRSKKKRLLWFLLIPLLIIALGAGGYSFHIYSKAKSILSNAYSELGR
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCC
GDKSSKREKAVKPMTDNISILIMGVDESDIRDKNYGKATRTDALLLATINKNDKSVKLVS
CCCCHHHHHHCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEE
IPRDSRVYIKSREKYDKITHAHVFGGVDSTIDTVENFLDVPVDYYVKFNFKSFIKIVDSL
CCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHC
GGITVDVPVEFTEQNSKDEADAIHLKKGRQHLNGEEALALARTRHIDSDYMRGQRQQLVL
CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCHHHHHHH
EAIAEKALSLNSINKIGGLLDAVDKDLKTNLTFDDMMTIAKNSMGSNLKMDKLQVEGTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCC
YIGGIYYYVPNEKSVNNISTTLQEHLGVTNKNEHKKL
EECEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA