Click here to switch to the map view.

The map label for this gene is ylmB [H]

Identifier: 49183495

GI number: 49183495

Start: 489423

End: 490703

Strand: Direct

Name: ylmB [H]

Synonym: BAS0467

Alternate gene names: 49183495

Gene position: 489423-490703 (Clockwise)

Preceding gene: 49183494

Following gene: 49183497

Centisome position: 9.36

GC content: 39.27

Gene sequence:

>1281_bases
ATGAATGAAGAAGTTTCACAGCTATTAGAACAAATTGATTTACGAAAAGATGAGTTACTAGAGCTTACAAAAACCTTAAT
TCGTTTTGAAACACCAGCACCGCCGGCGAGAAACACAAATGAGGCGCAAGAATTTGTTGCAGAGTTTTTAAGAAAACGAA
ATTTTAGTGTTGATAAATGGGATGTATATCCGAATGATCCGAACGTTGTTGGGGTGAAAAAAGGGACAGAAAGTGACACA
CATAAAAGTCTTATTATTAATGGACATATGGATGTAGCTGAAGTATCGGCAGATGAGGCGTGGGAAACAAATCCGTTTGA
GCCATTTATAAAAGATGGTTGGTTAGTTGGACGTGGTGCGGCAGATATGAAAGGGGGACTAGCTGGAGCGTTATTCGCTA
TTCAGCTATTACAAGAAGCTGGTATTGAATTACCTGGAGATGTAATCTTTCAATCCGTAATTGGGGAAGAAGTGGGAGAA
GCAGGTACACTTCAATGCTGCAAAAGAGGGTATGATGCTGATTTTGCAGTCGTAGTGGATACGAGTGATTTACATATGCA
AGGACAGGGCGGCGTAATTACTGGATGGATTACTGTGAAAAGCCCGCAAACGTTTCATGATGCAACACGTAGGCAAATGA
TCCATGCAGGGGGTCGTTTATTCGGAGCGAGCGCAATTGAAAAAATGATGAAAATTGTGCAAAGTTTACAAGAATTAGAG
CGGCATTGGGCAGTTATGAAAACATATGAAGGTTATCCGTCTGGAACAACAACAATTAATCCAGCTGTTATAGAAGGTGG
ACGGCATGCAGCGTTTATTGCGGATGAGTGCCGTTTGTGGATAACAGTGCACTTTTATCCGAATGAAACACATGAACAAA
TAATAAAAGAAATTGAAGAGTATATCGGGAAAGTGGCAGCTGCTGATCCATGGTTAAGTGAAAATCCACCGCAATTTAAG
TGGGGCGGAGAATCAATGATTGTGGATCGTGGCGAAATTTTTCCTTCTTTAGAAATAGATAGTGAACATGCAGCTGTAAA
AACGCTTAGCTCAGTACACGAATCAATTCTTTCTAAAAATGCAATTTTAGATATGTCTGCAACGGTAACGGATGGTGGTT
GGTTTAGTGAATTTCATATTCCGGCCGTTATTTACGGACCAGGTACATTAGAGGAAGCTCATTCAATAAATGAGAAAGTA
GAAATAGAACAGTTAATTGAATTTACAAAAGTAATAACAGCATTTATATACGAATGGTGTCATACGAAAAAAATAGATTA
G

Upstream 100 bases:

>100_bases
TATAATATTGAGTAATTTAGAGACTGTAAAATTGTAAACAGTCTCTTTTTTTGTGAAAATAAAGCTGGAAACATATTATG
TATGTAAAGGGGGATTAGCG

Downstream 100 bases:

>100_bases
TATGTTGAAATCGTACAGGTATGTATACTTGTACGATTTTTTAGTGAACTATTTCAGAGTTGGATAGAAACAACTGAAAT
AGTTCTTTATTTTTCTATGT

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: Amidohydrolase; Formylaminopyrimidine deformylase [H]

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MNEEVSQLLEQIDLRKDELLELTKTLIRFETPAPPARNTNEAQEFVAEFLRKRNFSVDKWDVYPNDPNVVGVKKGTESDT
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDVIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EIEQLIEFTKVITAFIYEWCHTKKID

Sequences:

>Translated_426_residues
MNEEVSQLLEQIDLRKDELLELTKTLIRFETPAPPARNTNEAQEFVAEFLRKRNFSVDKWDVYPNDPNVVGVKKGTESDT
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDVIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EIEQLIEFTKVITAFIYEWCHTKKID
>Mature_426_residues
MNEEVSQLLEQIDLRKDELLELTKTLIRFETPAPPARNTNEAQEFVAEFLRKRNFSVDKWDVYPNDPNVVGVKKGTESDT
HKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDVIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIVDRGEIFPSLEIDSEHAAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EIEQLIEFTKVITAFIYEWCHTKKID

Specific function: Catalyzed the deformylation of formylaminopyrimidine to give aminopyrimidine [H]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=347, Percent_Identity=25.0720461095101, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1790395, Length=339, Percent_Identity=21.8289085545723, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211059, Length=173, Percent_Identity=29.4797687861272, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17563146, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319758, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 47446; Mature: 47446

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEVSQLLEQIDLRKDELLELTKTLIRFETPAPPARNTNEAQEFVAEFLRKRNFSVDKW
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGTESDTHKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDVIFQSVIGEEVGEAGTLQCCKRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIVDRGEIFPSLEIDSEHAAVKTLSSVHESILSKN
HHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHCC
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEIEQLIEFTKVITAFIYEWC
CEEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
HTKKID
HHCCCC
>Mature Secondary Structure
MNEEVSQLLEQIDLRKDELLELTKTLIRFETPAPPARNTNEAQEFVAEFLRKRNFSVDKW
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGTESDTHKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDVIFQSVIGEEVGEAGTLQCCKRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSDLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIVDRGEIFPSLEIDSEHAAVKTLSSVHESILSKN
HHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHCC
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEIEQLIEFTKVITAFIYEWC
CEEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
HTKKID
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]