Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46447430
Identifier: 46447430
GI number: 46447430
Start: 2150141
End: 2150842
Strand: Reverse
Name: 46447430
Synonym: pc1796
Alternate gene names: NA
Gene position: 2150842-2150141 (Counterclockwise)
Preceding gene: 46447431
Following gene: 46447429
Centisome position: 89.08
GC content: 35.61
Gene sequence:
>702_bases GTGCCCATGTATCCTTCCTTACCTATTCGTACAAAAGTGGAATCCCCTTTTCAAGCTTCAAGATGGTTGCAATGCCCAGT CTTATTAGATGAAGAAGAAATGAAATGCTTATTGACAGCGCTTGGAAATTTCTGGATTTTTAATGTCAGCAGTATTTTAA AATCTTCAGAAGGAGATATTTCCCAAGAAGAATTTTTAAAACAGTATACGTTGTATATTCAAAATTTAAAAAATGGTCAG TATCCGAATGATCAACTCATTAGGCGGTTTTTCTCGACTGTTTTTACTTTGGATCTAAATGCCCTTTATGAAGTACCTGT TGCTAACGACCGAAAACTAATTCGAGTGGAAAAACCTGTGATTCAATTGCAATCGCATCGCTTTGATTACTCTTTGGCTG ATGGGAAGTTTCGTTCGATGATTCTGGGCCAACATAGCATTTACTGGGGTATTCAATTTTCTTATCCCCAACTTTTTCAA GATCGCTCTTTTCAAGTAAAAAATGTCAGAGAAAATGAAGAATTTCCCAATACGGTTTTATTTAAACGTCTGCAAGGATG GGTTAGACATCACACAACTCCCACTTCATTTCTTATTAATCAACAAAAAATAAATGTCCCTATCAGGTTGGGAAAGCAAT GTTTAAGCTGGATCAACAAACATCCCCAGTTAAATGAAAAAAAGATGTTTGTTCAAAACTAG
Upstream 100 bases:
>100_bases TATTATGGGGATATGACTTTCCTGTTTTTAATGTTGCCGATAGCTTTATTTCAATTGGCATTGGTTTATTGTTTATTCTT TCTTTGTTTAAGTCTTAACG
Downstream 100 bases:
>100_bases TAAAAAGTACTTAGCTTTTCAACTAGTTTTAATCGATAAATTGCTAATACTTCAGAGGCCAATTCTTTATAATTTTTTCA AAAAAAGAAAGATAGGTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MPMYPSLPIRTKVESPFQASRWLQCPVLLDEEEMKCLLTALGNFWIFNVSSILKSSEGDISQEEFLKQYTLYIQNLKNGQ YPNDQLIRRFFSTVFTLDLNALYEVPVANDRKLIRVEKPVIQLQSHRFDYSLADGKFRSMILGQHSIYWGIQFSYPQLFQ DRSFQVKNVRENEEFPNTVLFKRLQGWVRHHTTPTSFLINQQKINVPIRLGKQCLSWINKHPQLNEKKMFVQN
Sequences:
>Translated_233_residues MPMYPSLPIRTKVESPFQASRWLQCPVLLDEEEMKCLLTALGNFWIFNVSSILKSSEGDISQEEFLKQYTLYIQNLKNGQ YPNDQLIRRFFSTVFTLDLNALYEVPVANDRKLIRVEKPVIQLQSHRFDYSLADGKFRSMILGQHSIYWGIQFSYPQLFQ DRSFQVKNVRENEEFPNTVLFKRLQGWVRHHTTPTSFLINQQKINVPIRLGKQCLSWINKHPQLNEKKMFVQN >Mature_232_residues PMYPSLPIRTKVESPFQASRWLQCPVLLDEEEMKCLLTALGNFWIFNVSSILKSSEGDISQEEFLKQYTLYIQNLKNGQY PNDQLIRRFFSTVFTLDLNALYEVPVANDRKLIRVEKPVIQLQSHRFDYSLADGKFRSMILGQHSIYWGIQFSYPQLFQD RSFQVKNVRENEEFPNTVLFKRLQGWVRHHTTPTSFLINQQKINVPIRLGKQCLSWINKHPQLNEKKMFVQN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27579; Mature: 27448
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMYPSLPIRTKVESPFQASRWLQCPVLLDEEEMKCLLTALGNFWIFNVSSILKSSEGDI CCCCCCCCCCCCCCCCHHHHHHEECCEEECHHHHHHHHHHHHHHHEEEHHHHHCCCCCCC SQEEFLKQYTLYIQNLKNGQYPNDQLIRRFFSTVFTLDLNALYEVPVANDRKLIRVEKPV CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEHHHH IQLQSHRFDYSLADGKFRSMILGQHSIYWGIQFSYPQLFQDRSFQVKNVRENEEFPNTVL HHHHHCCCCEEECCCHHHHHHHCCCEEEEEEEECCHHHHCCCCCEECCCCCCCCCCHHHH FKRLQGWVRHHTTPTSFLINQQKINVPIRLGKQCLSWINKHPQLNEKKMFVQN HHHHHHHHHHCCCCHHEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure PMYPSLPIRTKVESPFQASRWLQCPVLLDEEEMKCLLTALGNFWIFNVSSILKSSEGDI CCCCCCCCCCCCCCCHHHHHHEECCEEECHHHHHHHHHHHHHHHEEEHHHHHCCCCCCC SQEEFLKQYTLYIQNLKNGQYPNDQLIRRFFSTVFTLDLNALYEVPVANDRKLIRVEKPV CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEHHHH IQLQSHRFDYSLADGKFRSMILGQHSIYWGIQFSYPQLFQDRSFQVKNVRENEEFPNTVL HHHHHCCCCEEECCCHHHHHHHCCCEEEEEEEECCHHHHCCCCCEECCCCCCCCCCHHHH FKRLQGWVRHHTTPTSFLINQQKINVPIRLGKQCLSWINKHPQLNEKKMFVQN HHHHHHHHHHCCCCHHEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA