Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447346
Identifier: 46447346
GI number: 46447346
Start: 2050531
End: 2051352
Strand: Reverse
Name: 46447346
Synonym: pc1712
Alternate gene names: NA
Gene position: 2051352-2050531 (Counterclockwise)
Preceding gene: 46447347
Following gene: 46447343
Centisome position: 84.96
GC content: 36.25
Gene sequence:
>822_bases ATGTTTTTCAGAAAAATTTGGAAATGGTTATTTTGTGTTTATTTATTACCAATTCTAGGCTGGGCTTATGAAGATCAGCC TTGGATAGGCAATTATCTTGAATTTGAATGGACCTCTTCTCTTCAATTTCAATGCTACAAAGATTTATCGTGTAAATCTA ACTCAAAACCTTACCTTTCTCGCGATATTTTTCTTTATACTCAATTAGCACTTGCCGCCACTCCTCAGCTATCTTTAAAT TTAGGAGCTATGGCTGCCCGAACAAATAAACAGGCGGGTAGTATCGATCACTTAGAATTTAACGGACGTTATATCTTTTT GGATGATGTAATTGGAGATCCTGTGACATTAACCTTAGGAATCAACCTTGTTCATGCGTTTCCCTGGAGTCTGCGAGATC CAAGTTCTTTTCATCATGGCAAAAACGAAGGGGAGTTGTTTATTTCTATGGGTAAAGAATGGGCAGAAAAAGATCAGTGG TCTTCTAGGCTATGGGCTAAAGTAGGGCTTGGGAGTGCACTAAATGATTCTGCTTGGATTCGTTTAAAGATTGCTTTTGC TCAAAGAATTAGACTTTATCACGAATTTGAAATTTTCTCGCGAACTCTTTGTGGTTTTGGGAGGCGCTCCTTAAATTTAC GTCATTTTCATGGATATGGCTCTATTGATCATCAATCTATTGATTTAGGACTGCGATACACTTATCTTATTGATTTTGTA GGAAATTTGTCTGTAGAATATGCAAAACGTGTTTATTCCCAAAATTTTCCATCAAAAGCAAATCAAATTCAATTGACGTT CTTTTACCCTTTTGGATTGTAA
Upstream 100 bases:
>100_bases AAGATTTTGAATATCGGCAAGCTATTACTGCTGCAGGTAGTGGTTGTATGGCAGCCTTGGATGCTGAAAGATGGCTCGCT GAAAAAGGATTAGACAATTA
Downstream 100 bases:
>100_bases ACCCTTTACGTGTAATTTTGTCTTTTTCAGATAAATAAAAAGACCCGAAGAATGAAATTCGGGATCAATTAAGAAGACCA AACAGCAAATGCTGTTGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MFFRKIWKWLFCVYLLPILGWAYEDQPWIGNYLEFEWTSSLQFQCYKDLSCKSNSKPYLSRDIFLYTQLALAATPQLSLN LGAMAARTNKQAGSIDHLEFNGRYIFLDDVIGDPVTLTLGINLVHAFPWSLRDPSSFHHGKNEGELFISMGKEWAEKDQW SSRLWAKVGLGSALNDSAWIRLKIAFAQRIRLYHEFEIFSRTLCGFGRRSLNLRHFHGYGSIDHQSIDLGLRYTYLIDFV GNLSVEYAKRVYSQNFPSKANQIQLTFFYPFGL
Sequences:
>Translated_273_residues MFFRKIWKWLFCVYLLPILGWAYEDQPWIGNYLEFEWTSSLQFQCYKDLSCKSNSKPYLSRDIFLYTQLALAATPQLSLN LGAMAARTNKQAGSIDHLEFNGRYIFLDDVIGDPVTLTLGINLVHAFPWSLRDPSSFHHGKNEGELFISMGKEWAEKDQW SSRLWAKVGLGSALNDSAWIRLKIAFAQRIRLYHEFEIFSRTLCGFGRRSLNLRHFHGYGSIDHQSIDLGLRYTYLIDFV GNLSVEYAKRVYSQNFPSKANQIQLTFFYPFGL >Mature_273_residues MFFRKIWKWLFCVYLLPILGWAYEDQPWIGNYLEFEWTSSLQFQCYKDLSCKSNSKPYLSRDIFLYTQLALAATPQLSLN LGAMAARTNKQAGSIDHLEFNGRYIFLDDVIGDPVTLTLGINLVHAFPWSLRDPSSFHHGKNEGELFISMGKEWAEKDQW SSRLWAKVGLGSALNDSAWIRLKIAFAQRIRLYHEFEIFSRTLCGFGRRSLNLRHFHGYGSIDHQSIDLGLRYTYLIDFV GNLSVEYAKRVYSQNFPSKANQIQLTFFYPFGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31748; Mature: 31748
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFRKIWKWLFCVYLLPILGWAYEDQPWIGNYLEFEWTSSLQFQCYKDLSCKSNSKPYLS CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCC RDIFLYTQLALAATPQLSLNLGAMAARTNKQAGSIDHLEFNGRYIFLDDVIGDPVTLTLG HHHHEEEHHHHHCCCCCEEECCHHEECCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEE INLVHAFPWSLRDPSSFHHGKNEGELFISMGKEWAEKDQWSSRLWAKVGLGSALNDSAWI EEEEEECCCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE RLKIAFAQRIRLYHEFEIFSRTLCGFGRRSLNLRHFHGYGSIDHQSIDLGLRYTYLIDFV EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCEEHEEEEHHH GNLSVEYAKRVYSQNFPSKANQIQLTFFYPFGL CCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCC >Mature Secondary Structure MFFRKIWKWLFCVYLLPILGWAYEDQPWIGNYLEFEWTSSLQFQCYKDLSCKSNSKPYLS CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCC RDIFLYTQLALAATPQLSLNLGAMAARTNKQAGSIDHLEFNGRYIFLDDVIGDPVTLTLG HHHHEEEHHHHHCCCCCEEECCHHEECCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEE INLVHAFPWSLRDPSSFHHGKNEGELFISMGKEWAEKDQWSSRLWAKVGLGSALNDSAWI EEEEEECCCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE RLKIAFAQRIRLYHEFEIFSRTLCGFGRRSLNLRHFHGYGSIDHQSIDLGLRYTYLIDFV EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCEEHEEEEHHH GNLSVEYAKRVYSQNFPSKANQIQLTFFYPFGL CCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA