Click here to switch to the map view.

The map label for this gene is trbC [H]

Identifier: 46447067

GI number: 46447067

Start: 1706382

End: 1706978

Strand: Direct

Name: trbC [H]

Synonym: pc1433

Alternate gene names: 46447067

Gene position: 1706382-1706978 (Clockwise)

Preceding gene: 46447066

Following gene: 46447068

Centisome position: 70.67

GC content: 42.38

Gene sequence:

>597_bases
TTGTTGCTGAATGGAGGACTATGGGGAGAAGAAATGCAACATTTTGCTTTAGACTCCAATTGGCTTAAGCAAGCGCAACA
AGTCGATGAAAAAGCTGTGCATTGGCTAAAAGACCATTTAAAAGAGCGTTTGGCATCGGAGAATTTTTTGAGAAATCCCC
TAGAGGAAAAGGGATCGCAACTCGCCACTACTCAATGCCAAAGTGCGGGAATGGAGGTTAAAGAAGAGTCTCCTCTCTAT
GTATTTATGTCCTTTTCATTAGACGATCGCTTGTGGGTGCAATTGTCCCAAGAGTTAGAGAAACTAGGAGGAATTTTTGT
GTTAAGAGGGCTTCCGCAAAATAGCTTTAAAGAATTGGCCAACCGAATCTTTACGTTGCAAGAACAAGGCGTGCGTGTGC
CTATCCAAATTCACCCTCAGCTATTTCAAAGATTTGACATTCAACTAGTGCCAACCATTGCTGTTACCGAGGGTGAGCAG
TATGACAAAATCTCGGGAAATCTTTCTATACAGGGTGCTTTAGAAAAAATGTCCCTGTACGGAGAGACTCAGCGAGCCAA
ATTCCTTTTGCAACAATGGAAAGAGCAACAAAAATGA

Upstream 100 bases:

>100_bases
AAAGTGTTCCAGCACGCGTCTCCCAAGAAGGGTTGCGACTCAAAATAGAATTAATTCCGATTGGAGAGAGTTCATGCGTG
CCTATTTCTTAAGGGTGATT

Downstream 100 bases:

>100_bases
GGAAAAAAATTCTTTATCTGCTCTGTCTTGTATTCTTCTCTTCCCTTTCAGCTGGAGAGGGAAAATTTATGAATCCGTTT
ACCGATGTGTGTTGGGAATG

Product: putative F pilus assembly protein trbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQLATTQCQSAGMEVKEESPLY
VFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQ
YDKISGNLSIQGALEKMSLYGETQRAKFLLQQWKEQQK

Sequences:

>Translated_198_residues
MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQLATTQCQSAGMEVKEESPLY
VFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQ
YDKISGNLSIQGALEKMSLYGETQRAKFLLQQWKEQQK
>Mature_198_residues
MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQLATTQCQSAGMEVKEESPLY
VFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQ
YDKISGNLSIQGALEKMSLYGETQRAKFLLQQWKEQQK

Specific function: Essential for F plasmid conjugative transfer, participates in F-pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019106
- InterPro:   IPR014113 [H]

Pfam domain/function: PF09673 TrbC_Ftype [H]

EC number: NA

Molecular weight: Translated: 22890; Mature: 22890

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQ
CEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCH
LATTQCQSAGMEVKEESPLYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELA
HHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHH
NRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQYDKISGNLSIQGALEKMSLY
HHHHHHHHCCCEEEEEECHHHHHHCCCEEEEEEEEECCCCHHHCCCCEEEHHHHHHHHHH
GETQRAKFLLQQWKEQQK
CCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQ
CEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCH
LATTQCQSAGMEVKEESPLYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELA
HHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHH
NRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQYDKISGNLSIQGALEKMSLY
HHHHHHHHCCCEEEEEECHHHHHHCCCEEEEEEEEECCCCHHHCCCCEEEHHHHHHHHHH
GETQRAKFLLQQWKEQQK
CCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2050638; 7915817; 2198250; 1593622 [H]