Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446447
Identifier: 46446447
GI number: 46446447
Start: 995142
End: 995972
Strand: Direct
Name: 46446447
Synonym: pc0813
Alternate gene names: NA
Gene position: 995142-995972 (Clockwise)
Preceding gene: 46446443
Following gene: 46446448
Centisome position: 41.22
GC content: 35.86
Gene sequence:
>831_bases ATGTCAATTCCTGCCAATTTAAGCATCGTTCCTACTGGAAATGGCACACGACTATTAGAAAATAGTGAAATACATACAGA AGCACAGCAAACATCTGATGTGCAAGTTCCTTATGTATTAAGGATTCCTTTAAATTTAGCTAAGGGTGGTGTAGCTGGTT TTTTGGCGTACGGAATGGAGCGCGTTCTCGTCTGGATTAAATTTGTTGAATATAGTCAACCCGTGACTTGCTTTCCTTAT GTTTTGTCTGGAATAGCAAGCGCTGCCATTATTGAATCTGCAAACTTAACACATCTCGTTGCTTTAAAATTAATTGGAGA GCGTACAATTTATGAAAATTTGCCTGAAAGGAAATCTAACCTTGTAGATAAATTAAGAAAGTATTCGTGGTCAGTTGTTC GTTTTGGGGAAAACGTAGAAAAAAAAATAGACGAAGTTTTTTCTTATGCGTTAAAAATTCGGACGAAGCAACAAATTTTG GATTGCCACATAAAAGATAACGATTTAGTTTTTTTAGAAATTTTTCGCCGCGCATTGATTGAACAAGTTAAAGAATCTTT CGTTACCTCAATTCCTCAAGAGTTGGGAATAGGATTAGTAAAAAAATGTGGCTATATTTTTGTCGGTGGCGAACTCATTT TAAGTATGCACATTTTACAATTTGTCCATGGCTTAGTAGATAAATTTACGGCTGTTTATAACAAAATACGAGCAGAAGAA GAAGAAGAATTAGCTAGACAAGCATCTCAGACTTGTGGGCAATCCGACTCTATAAAAGAACAAGTTATAGTAGCGAACAG TCAGCATATAGAACTGGAGCAAGCAGTTTAG
Upstream 100 bases:
>100_bases AAAATAACAACTTTTGTTTAATATTTATGTCGTAAAAGATCTTGTTAAACAATTATTTTAATGTTACACTTATTTATTAA TTTTTTAAAAGGGAGTTAAC
Downstream 100 bases:
>100_bases CTTATTGTTTAAAATTTTATATCAATCGCTAAATTCATAGTTTAAAATTTTTTACTTAATTTATAGTGCTCAAAAATTTT ATTGTAAAATTTTTCTTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSIPANLSIVPTGNGTRLLENSEIHTEAQQTSDVQVPYVLRIPLNLAKGGVAGFLAYGMERVLVWIKFVEYSQPVTCFPY VLSGIASAAIIESANLTHLVALKLIGERTIYENLPERKSNLVDKLRKYSWSVVRFGENVEKKIDEVFSYALKIRTKQQIL DCHIKDNDLVFLEIFRRALIEQVKESFVTSIPQELGIGLVKKCGYIFVGGELILSMHILQFVHGLVDKFTAVYNKIRAEE EEELARQASQTCGQSDSIKEQVIVANSQHIELEQAV
Sequences:
>Translated_276_residues MSIPANLSIVPTGNGTRLLENSEIHTEAQQTSDVQVPYVLRIPLNLAKGGVAGFLAYGMERVLVWIKFVEYSQPVTCFPY VLSGIASAAIIESANLTHLVALKLIGERTIYENLPERKSNLVDKLRKYSWSVVRFGENVEKKIDEVFSYALKIRTKQQIL DCHIKDNDLVFLEIFRRALIEQVKESFVTSIPQELGIGLVKKCGYIFVGGELILSMHILQFVHGLVDKFTAVYNKIRAEE EEELARQASQTCGQSDSIKEQVIVANSQHIELEQAV >Mature_275_residues SIPANLSIVPTGNGTRLLENSEIHTEAQQTSDVQVPYVLRIPLNLAKGGVAGFLAYGMERVLVWIKFVEYSQPVTCFPYV LSGIASAAIIESANLTHLVALKLIGERTIYENLPERKSNLVDKLRKYSWSVVRFGENVEKKIDEVFSYALKIRTKQQILD CHIKDNDLVFLEIFRRALIEQVKESFVTSIPQELGIGLVKKCGYIFVGGELILSMHILQFVHGLVDKFTAVYNKIRAEEE EELARQASQTCGQSDSIKEQVIVANSQHIELEQAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31009; Mature: 30878
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPANLSIVPTGNGTRLLENSEIHTEAQQTSDVQVPYVLRIPLNLAKGGVAGFLAYGME CCCCCCCEEEECCCCCEEECCCCHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHH RVLVWIKFVEYSQPVTCFPYVLSGIASAAIIESANLTHLVALKLIGERTIYENLPERKSN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHH LVDKLRKYSWSVVRFGENVEKKIDEVFSYALKIRTKQQILDCHIKDNDLVFLEIFRRALI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHH EQVKESFVTSIPQELGIGLVKKCGYIFVGGELILSMHILQFVHGLVDKFTAVYNKIRAEE HHHHHHHHHHCHHHHCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EEELARQASQTCGQSDSIKEQVIVANSQHIELEQAV HHHHHHHHHHHCCCCCCCHHHEEEECCCCEEHHCCC >Mature Secondary Structure SIPANLSIVPTGNGTRLLENSEIHTEAQQTSDVQVPYVLRIPLNLAKGGVAGFLAYGME CCCCCCEEEECCCCCEEECCCCHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHH RVLVWIKFVEYSQPVTCFPYVLSGIASAAIIESANLTHLVALKLIGERTIYENLPERKSN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHH LVDKLRKYSWSVVRFGENVEKKIDEVFSYALKIRTKQQILDCHIKDNDLVFLEIFRRALI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHH EQVKESFVTSIPQELGIGLVKKCGYIFVGGELILSMHILQFVHGLVDKFTAVYNKIRAEE HHHHHHHHHHCHHHHCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EEELARQASQTCGQSDSIKEQVIVANSQHIELEQAV HHHHHHHHHHHCCCCCCCHHHEEEECCCCEEHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA