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The map label for this gene is lcrH

Identifier: 46446421

GI number: 46446421

Start: 967681

End: 968181

Strand: Direct

Name: lcrH

Synonym: pc0787

Alternate gene names: NA

Gene position: 967681-968181 (Clockwise)

Preceding gene: 46446417

Following gene: 46446422

Centisome position: 40.08

GC content: 35.13

Gene sequence:

>501_bases
ATGAAAGATGATGTAAGTGAGTTTCAGTTATCAGAAAAAGCTAAAGAAAAATTAAAGAATAAAAAACTTCTCAAAAAAGA
GTTGGCAGAAGGTAAAACTGCTCAACAGATCATGGAACTTCAAGATTCCACGATGGCAAAGTTTTATGGAGCAGCTTATT
ATTTATTTGAGCATAAACGCTATGAAGATGCCGCACACGCCTTTTTATTTTTAGCGACTTTAAATCCCTATATTCACGAT
TATTGGCTGGGTTTGGGGATGGCTACTCAAATGTGTCAAAATTACGAAGCTGCTATTGATGCTTACGAACTAGCAGCTTT
TTGTGATATCAACAGCCCTGTACCCTATTTTTATTTAGCAAAATGCTTATTTGCCATCCATGATCGCGAAAGTGCTTTGC
AAGCTTTAGATTTAGCTATTGAAACAGCGGGAGAATCTGAAGAATATACAGATTTGAAAAAACAAGCTGAAGAGGCAAAA
CGTATTTTATTAAACGATTAA

Upstream 100 bases:

>100_bases
TTAACAAATTTGACGGCTTTGAGTCAGAATGTCTAGATATTTTTTGAGTAATAAAATTTTAAACTTTCGAATTCTCCGAC
AATACATTTGGAAAAAGATT

Downstream 100 bases:

>100_bases
TTTTAAACTCGTGATCTTTGCCTCTCTACACTGATTTGAAAGAAGCTGTCACTGTTAGATAAAATTTTGCAATCCTTACT
TATGCATTCGAATCAAAAAA

Product: putative regulatory protein, involved in type III secretion lcrH, sycD

Products: NA

Alternate protein names: Type III Secretion Chaperone; TPR Repeat-Containing Protein; Type III Secretion Chaperone Low Calcium Response Protein H; Low Calcium Response Protein H

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKDDVSEFQLSEKAKEKLKNKKLLKKELAEGKTAQQIMELQDSTMAKFYGAAYYLFEHKRYEDAAHAFLFLATLNPYIHD
YWLGLGMATQMCQNYEAAIDAYELAAFCDINSPVPYFYLAKCLFAIHDRESALQALDLAIETAGESEEYTDLKKQAEEAK
RILLND

Sequences:

>Translated_166_residues
MKDDVSEFQLSEKAKEKLKNKKLLKKELAEGKTAQQIMELQDSTMAKFYGAAYYLFEHKRYEDAAHAFLFLATLNPYIHD
YWLGLGMATQMCQNYEAAIDAYELAAFCDINSPVPYFYLAKCLFAIHDRESALQALDLAIETAGESEEYTDLKKQAEEAK
RILLND
>Mature_166_residues
MKDDVSEFQLSEKAKEKLKNKKLLKKELAEGKTAQQIMELQDSTMAKFYGAAYYLFEHKRYEDAAHAFLFLATLNPYIHD
YWLGLGMATQMCQNYEAAIDAYELAAFCDINSPVPYFYLAKCLFAIHDRESALQALDLAIETAGESEEYTDLKKQAEEAK
RILLND

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19045; Mature: 19045

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDDVSEFQLSEKAKEKLKNKKLLKKELAEGKTAQQIMELQDSTMAKFYGAAYYLFEHKR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEDAAHAFLFLATLNPYIHDYWLGLGMATQMCQNYEAAIDAYELAAFCDINSPVPYFYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KCLFAIHDRESALQALDLAIETAGESEEYTDLKKQAEEAKRILLND
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDDVSEFQLSEKAKEKLKNKKLLKKELAEGKTAQQIMELQDSTMAKFYGAAYYLFEHKR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEDAAHAFLFLATLNPYIHDYWLGLGMATQMCQNYEAAIDAYELAAFCDINSPVPYFYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KCLFAIHDRESALQALDLAIETAGESEEYTDLKKQAEEAKRILLND
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA