Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446293
Identifier: 46446293
GI number: 46446293
Start: 804452
End: 804976
Strand: Direct
Name: 46446293
Synonym: pc0659
Alternate gene names: NA
Gene position: 804452-804976 (Clockwise)
Preceding gene: 46446292
Following gene: 46446294
Centisome position: 33.32
GC content: 34.86
Gene sequence:
>525_bases ATGAAATTTTTAAAAACTATTTTATTAATTACCATTCTTGCAGTTGTGACAGCCCTACCTTTAGCTGCACTATCTATGGG GCGATTGGGAGAGCCATTTGAAAGAGAGGGGAATACTTGGCAGAAAGTTTATTACGAAGATGAAAAAAGAAGCATTCAAG CAGACCTTCCAGGTAGCCCAATAGCAGGATTTTCAAATGGATTATGCTATCTTTATAGTCAATATCAAAATGTTAATTAT GAAGTACACTTGACTCCTTCTGAAAAATTCAAAGCACCAAAAAAAATAGATGAATTCATAGCGCTGTTCAAAAATATCCC TAACGCCACTATACATCCTTTGGTTCCCGATCAGCGAAAAGTTAGATATATGGTGCAGGTAGAACAATTTAACGAAACTA AAACCACCTGTTTAGCTGTCGCTCGTATTTATGCCACAGAGGACACTCTTTATTATGCCATTGTAGAAGGGAATAATTTT GATTTAGCCGACTCTTTCTTTAATTCAGTAAAAATTTTAAATTAA
Upstream 100 bases:
>100_bases GAGAACGTTATTTTTTCTTGTTAATATTACATAACTATTTAGTATTCAATGATAAATGATTTAAAAAATTCAAAAACAAA TAATAAAGGAAAAAAGGTTT
Downstream 100 bases:
>100_bases ACTTATTCATTCGTTTATTCCTAAAATCCTTCAGGCATGTTTCTGAAGGATTTTATTTTTTGTGGAATTTTTATTGAGAA CGATAGATTAAATTGAAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MKFLKTILLITILAVVTALPLAALSMGRLGEPFEREGNTWQKVYYEDEKRSIQADLPGSPIAGFSNGLCYLYSQYQNVNY EVHLTPSEKFKAPKKIDEFIALFKNIPNATIHPLVPDQRKVRYMVQVEQFNETKTTCLAVARIYATEDTLYYAIVEGNNF DLADSFFNSVKILN
Sequences:
>Translated_174_residues MKFLKTILLITILAVVTALPLAALSMGRLGEPFEREGNTWQKVYYEDEKRSIQADLPGSPIAGFSNGLCYLYSQYQNVNY EVHLTPSEKFKAPKKIDEFIALFKNIPNATIHPLVPDQRKVRYMVQVEQFNETKTTCLAVARIYATEDTLYYAIVEGNNF DLADSFFNSVKILN >Mature_174_residues MKFLKTILLITILAVVTALPLAALSMGRLGEPFEREGNTWQKVYYEDEKRSIQADLPGSPIAGFSNGLCYLYSQYQNVNY EVHLTPSEKFKAPKKIDEFIALFKNIPNATIHPLVPDQRKVRYMVQVEQFNETKTTCLAVARIYATEDTLYYAIVEGNNF DLADSFFNSVKILN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19826; Mature: 19826
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFLKTILLITILAVVTALPLAALSMGRLGEPFEREGNTWQKVYYEDEKRSIQADLPGSP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCEEECCCCCCC IAGFSNGLCYLYSQYQNVNYEVHLTPSEKFKAPKKIDEFIALFKNIPNATIHPLVPDQRK CCCCCCCEEEEEEHHCCCCEEEEECCHHHHCCHHHHHHHHHHHHCCCCCEECCCCCCHHH VRYMVQVEQFNETKTTCLAVARIYATEDTLYYAIVEGNNFDLADSFFNSVKILN HEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHEEECC >Mature Secondary Structure MKFLKTILLITILAVVTALPLAALSMGRLGEPFEREGNTWQKVYYEDEKRSIQADLPGSP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCEEECCCCCCC IAGFSNGLCYLYSQYQNVNYEVHLTPSEKFKAPKKIDEFIALFKNIPNATIHPLVPDQRK CCCCCCCEEEEEEHHCCCCEEEEECCHHHHCCHHHHHHHHHHHHCCCCCEECCCCCCHHH VRYMVQVEQFNETKTTCLAVARIYATEDTLYYAIVEGNNFDLADSFFNSVKILN HEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA