Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446260
Identifier: 46446260
GI number: 46446260
Start: 766702
End: 767376
Strand: Direct
Name: 46446260
Synonym: pc0626
Alternate gene names: NA
Gene position: 766702-767376 (Clockwise)
Preceding gene: 46446259
Following gene: 46446261
Centisome position: 31.75
GC content: 38.37
Gene sequence:
>675_bases ATGACTTCAAAAACAACCCATACAAAAGATTTTTTCGCAGGAGCTGTAATTGGTAGTTTACTAGGTGGTGTAACTGCACT TCTTACAGCGCCAAAAGCAGGAAAAAGGTTACGTCAAGAGATGAATGATTTTTACAGCGATGTATCAGATCAGTCTCATG ATATTGCAGATAATATTTCCAAAAAAACTAGATCTGTCATGAAATCTTTTGGTTCTCATTCCAACGAATTAGCGGATAAA GCTAAATGTTTATATTGCGGAGTAAAAAAAATGATGGGATGTGAACAGGAAGAGGAAGAAGAAACCTGCACAAAAGATTT AATGATGGGCGGGGTTATTGGTGGAGTATTAGGTGCTGTGGTAGGGCTTTTGCTTGCTCCTAAATCTGGTAGTGAGCTGA GAGATGATATTGTCGAAGGATGTGAAAAAGTGAGTGATAAAACTCGTGGTATGGCAGATCAATTTTCCAAAAATGGAAAA AAAATGGCCGCAACTGCGTATTCGAAAACCAACAAATGGCTTGAGTTGGCAAAGGGCATAGTCCATGAGTGGACTGATGA AGCAGAAGAAAAAAGCGAAAATTTTACCAGTCAAGCTAAACATCGTATGGATGATTTAATGGACTGGGCTGCTTTAGGTT ATCGTGTTTGGCAAGGTATTAACAAAAAACGATAA
Upstream 100 bases:
>100_bases TAGGGATGAAAGCCCCGAGTTACCATTAGTCGCAGAAATTCTTGAATTAGCAAGCCAGGGCTGCCGCCTATGGCAAAATC TAAAGAAAAGGAGATAATCG
Downstream 100 bases:
>100_bases ATTCTAGCAAGTAAAGATCAAGGATGGTTCCTATGAATAAAAAGATCCTTTTAGGAAGCCTGGCTGGGGGCTTTGTCGGA TTGACAACAGCTTTATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTSKTTHTKDFFAGAVIGSLLGGVTALLTAPKAGKRLRQEMNDFYSDVSDQSHDIADNISKKTRSVMKSFGSHSNELADK AKCLYCGVKKMMGCEQEEEEETCTKDLMMGGVIGGVLGAVVGLLLAPKSGSELRDDIVEGCEKVSDKTRGMADQFSKNGK KMAATAYSKTNKWLELAKGIVHEWTDEAEEKSENFTSQAKHRMDDLMDWAALGYRVWQGINKKR
Sequences:
>Translated_224_residues MTSKTTHTKDFFAGAVIGSLLGGVTALLTAPKAGKRLRQEMNDFYSDVSDQSHDIADNISKKTRSVMKSFGSHSNELADK AKCLYCGVKKMMGCEQEEEEETCTKDLMMGGVIGGVLGAVVGLLLAPKSGSELRDDIVEGCEKVSDKTRGMADQFSKNGK KMAATAYSKTNKWLELAKGIVHEWTDEAEEKSENFTSQAKHRMDDLMDWAALGYRVWQGINKKR >Mature_223_residues TSKTTHTKDFFAGAVIGSLLGGVTALLTAPKAGKRLRQEMNDFYSDVSDQSHDIADNISKKTRSVMKSFGSHSNELADKA KCLYCGVKKMMGCEQEEEEETCTKDLMMGGVIGGVLGAVVGLLLAPKSGSELRDDIVEGCEKVSDKTRGMADQFSKNGKK MAATAYSKTNKWLELAKGIVHEWTDEAEEKSENFTSQAKHRMDDLMDWAALGYRVWQGINKKR
Specific function: Unknown
COG id: COG4980
COG function: function code R; Gas vesicle protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24644; Mature: 24513
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKTTHTKDFFAGAVIGSLLGGVTALLTAPKAGKRLRQEMNDFYSDVSDQSHDIADNIS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH KKTRSVMKSFGSHSNELADKAKCLYCGVKKMMGCEQEEEEETCTKDLMMGGVIGGVLGAV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VGLLLAPKSGSELRDDIVEGCEKVSDKTRGMADQFSKNGKKMAATAYSKTNKWLELAKGI HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH VHEWTDEAEEKSENFTSQAKHRMDDLMDWAALGYRVWQGINKKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TSKTTHTKDFFAGAVIGSLLGGVTALLTAPKAGKRLRQEMNDFYSDVSDQSHDIADNIS CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH KKTRSVMKSFGSHSNELADKAKCLYCGVKKMMGCEQEEEEETCTKDLMMGGVIGGVLGAV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VGLLLAPKSGSELRDDIVEGCEKVSDKTRGMADQFSKNGKKMAATAYSKTNKWLELAKGI HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH VHEWTDEAEEKSENFTSQAKHRMDDLMDWAALGYRVWQGINKKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA