Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446219
Identifier: 46446219
GI number: 46446219
Start: 719625
End: 721367
Strand: Direct
Name: 46446219
Synonym: pc0585
Alternate gene names: NA
Gene position: 719625-721367 (Clockwise)
Preceding gene: 46446218
Following gene: 46446220
Centisome position: 29.8
GC content: 35.97
Gene sequence:
>1743_bases ATGTTAATGCTCAGATCTATTTTGTTAACTTTTTTGGTTCTTTATTTCTTGCAGATTTTCGGAGCTGAAAAAGAGGAAAT TCAGAGGGTCGTTCGCCGTATTGAAGCTCATCTGCATATTCAAGATACCCCTTCCGCTTACTTTGAAGCTAAACAAGCGA TAGCTTCTTATTCTAGTTCTCAAAGCATTCATGAAGTTTATATTAAGGCAACAGCGCGTTCTGGTTACGAAAAAGAAATG CTTTGTGCTTGGCAAAACTATTTTAAGCAATTTCCAAATCAAATAGAAAATCGAGAATTAATAGAAGAAATGGCTTGGGG GGTTTTAGGCAAGGCCGCTCAATCTCATTCATTAATTACTCGGCACCTTGCTTTATTGGCAGCTTTTTTCTGTAAGGATA CTAAAGGAGTAGAAATTCTTTTTCAGGGCATGCAAGATTCAAATTATGCGATCAGAGCCTTTGCTGTGAAATTGTCCAGC CATTTACACGATGACAAATTAATAAAATCAGTTAAAGAACTTTTTCGAAATGAGAAAGTTAGGTTAGTTAAACATGAAGT GATCAAAGCAATTGGGAAAATGAAAATACTAGAATTAAAAGAAGAGTTAGAATTTTTAATTAGTTCAGAGCAAAGTCTTT CCGAAGAAAAAGCCTTAGCTATCGAGTCTCTAGTTGCTTTATTGAATTCTTTAAAAAGAGAAGAAGTCGTTCGTTTAATT CAAAGCGATCGAGTCGGTTTGCGTTTAGTGGCTTGTCAGGCTATTGCTCATTTTCAATCTCAACGGGATGTCGACCAATT GTTAATCTTAACAAATGATTATCATCCCCAGGTGAAAATGGCTAGCTATCAAGCAATGGGCTTGCTTAAGTCGAAAGAGC AAAATGATAGTGTTATAGAAGCTGCTCGAAAGGGAATAAAAGATGATCATTTTAAAGTTGCATTGTCTGCTGCCTGGTTA TTATTGCTCTATCATCCAAACGAAGCTAAAGAAGTTTTTCAATGTTACTTATTAAGCGATAAACCCGAAGTCCGTTTGAC GGCTTCAGCTGCTTTAGCTTTAGCAGGTAGAGCAGGTATAGATTTGGCTTCGCAATTTCTTGAAAATCATCAAGATCCCT ATATCCGTCTCAATCTTGCTTGTGGATTAGTCAAACAAAGATGTTGTTTGAAACAAGCTGCTCAAGTCATCAAGCAAGTC TTGCTTTCGCAAAAAGATAAGTTTTGTGAAATTGAGTGTGGAATATTTAAATCGATTGCAGGTTGTCATTATAGTCGATC TGAAAAAATAACAGAAAATCCAGAAATGAATAATCAGCTTCTTCGTTTAGAGTTATTCAATATTCTATCGATTTTAAAAG AACCTAATACACAAAATGCGATACGAGAATTTTTATCAGAAAGAAACTGGGGCATTACGGGTGCCGCTGCCGCCTTACTT TTAACAGAAGGTGATGAAGAGTCTATTGAAGTGGTATTGGAACTTCTTAAAGACCCCTGCACCAAAGTACGAATACAGGC CGCTTTAGTTTTATCAATATGGTCACACGAAGAAGATCCTATTCATGTTTTACAGGAAGAGTATTTAAATAGTGATCGGG AAACAAAAGCAAAAATCTTAGAGGGCATTGGACGGATTGGATCTATGAAATCTATTCCATTTTTAATTGAAACTTTAAAA GAACCTTCTCAAACGTTACGCTTAATTGCAGCAATGGCATTAATTCAATCCCTGAATAACTAA
Upstream 100 bases:
>100_bases GAATTCGAATTAGTAGTTCCGAAACAATTCTTTTTGAGTTGTTAAAAGATTCCAAACAACCCGAATTTAAATCAATTAGT CAAATGATTAAGTCTTGTGA
Downstream 100 bases:
>100_bases ATTAATTCTAGTGCATTTAACATCCCTAGGGGAAATTTAAATGAATATCCGTTTATGGCATTTTGAAACCCTTACTTATT ATTTACTAGAGGAATTTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MLMLRSILLTFLVLYFLQIFGAEKEEIQRVVRRIEAHLHIQDTPSAYFEAKQAIASYSSSQSIHEVYIKATARSGYEKEM LCAWQNYFKQFPNQIENRELIEEMAWGVLGKAAQSHSLITRHLALLAAFFCKDTKGVEILFQGMQDSNYAIRAFAVKLSS HLHDDKLIKSVKELFRNEKVRLVKHEVIKAIGKMKILELKEELEFLISSEQSLSEEKALAIESLVALLNSLKREEVVRLI QSDRVGLRLVACQAIAHFQSQRDVDQLLILTNDYHPQVKMASYQAMGLLKSKEQNDSVIEAARKGIKDDHFKVALSAAWL LLLYHPNEAKEVFQCYLLSDKPEVRLTASAALALAGRAGIDLASQFLENHQDPYIRLNLACGLVKQRCCLKQAAQVIKQV LLSQKDKFCEIECGIFKSIAGCHYSRSEKITENPEMNNQLLRLELFNILSILKEPNTQNAIREFLSERNWGITGAAAALL LTEGDEESIEVVLELLKDPCTKVRIQAALVLSIWSHEEDPIHVLQEEYLNSDRETKAKILEGIGRIGSMKSIPFLIETLK EPSQTLRLIAAMALIQSLNN
Sequences:
>Translated_580_residues MLMLRSILLTFLVLYFLQIFGAEKEEIQRVVRRIEAHLHIQDTPSAYFEAKQAIASYSSSQSIHEVYIKATARSGYEKEM LCAWQNYFKQFPNQIENRELIEEMAWGVLGKAAQSHSLITRHLALLAAFFCKDTKGVEILFQGMQDSNYAIRAFAVKLSS HLHDDKLIKSVKELFRNEKVRLVKHEVIKAIGKMKILELKEELEFLISSEQSLSEEKALAIESLVALLNSLKREEVVRLI QSDRVGLRLVACQAIAHFQSQRDVDQLLILTNDYHPQVKMASYQAMGLLKSKEQNDSVIEAARKGIKDDHFKVALSAAWL LLLYHPNEAKEVFQCYLLSDKPEVRLTASAALALAGRAGIDLASQFLENHQDPYIRLNLACGLVKQRCCLKQAAQVIKQV LLSQKDKFCEIECGIFKSIAGCHYSRSEKITENPEMNNQLLRLELFNILSILKEPNTQNAIREFLSERNWGITGAAAALL LTEGDEESIEVVLELLKDPCTKVRIQAALVLSIWSHEEDPIHVLQEEYLNSDRETKAKILEGIGRIGSMKSIPFLIETLK EPSQTLRLIAAMALIQSLNN >Mature_580_residues MLMLRSILLTFLVLYFLQIFGAEKEEIQRVVRRIEAHLHIQDTPSAYFEAKQAIASYSSSQSIHEVYIKATARSGYEKEM LCAWQNYFKQFPNQIENRELIEEMAWGVLGKAAQSHSLITRHLALLAAFFCKDTKGVEILFQGMQDSNYAIRAFAVKLSS HLHDDKLIKSVKELFRNEKVRLVKHEVIKAIGKMKILELKEELEFLISSEQSLSEEKALAIESLVALLNSLKREEVVRLI QSDRVGLRLVACQAIAHFQSQRDVDQLLILTNDYHPQVKMASYQAMGLLKSKEQNDSVIEAARKGIKDDHFKVALSAAWL LLLYHPNEAKEVFQCYLLSDKPEVRLTASAALALAGRAGIDLASQFLENHQDPYIRLNLACGLVKQRCCLKQAAQVIKQV LLSQKDKFCEIECGIFKSIAGCHYSRSEKITENPEMNNQLLRLELFNILSILKEPNTQNAIREFLSERNWGITGAAAALL LTEGDEESIEVVLELLKDPCTKVRIQAALVLSIWSHEEDPIHVLQEEYLNSDRETKAKILEGIGRIGSMKSIPFLIETLK EPSQTLRLIAAMALIQSLNN
Specific function: Unknown
COG id: COG1413
COG function: function code C; FOG: HEAT repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65759; Mature: 65759
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMLRSILLTFLVLYFLQIFGAEKEEIQRVVRRIEAHLHIQDTPSAYFEAKQAIASYSSS CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCC QSIHEVYIKATARSGYEKEMLCAWQNYFKQFPNQIENRELIEEMAWGVLGKAAQSHSLIT CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHLALLAAFFCKDTKGVEILFQGMQDSNYAIRAFAVKLSSHLHDDKLIKSVKELFRNEKV HHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH RLVKHEVIKAIGKMKILELKEELEFLISSEQSLSEEKALAIESLVALLNSLKREEVVRLI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSDRVGLRLVACQAIAHFQSQRDVDQLLILTNDYHPQVKMASYQAMGLLKSKEQNDSVIE HCCCCCHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCEEHHHHHHHHHHHCCCCCHHHHH AARKGIKDDHFKVALSAAWLLLLYHPNEAKEVFQCYLLSDKPEVRLTASAALALAGRAGI HHHCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCH DLASQFLENHQDPYIRLNLACGLVKQRCCLKQAAQVIKQVLLSQKDKFCEIECGIFKSIA HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH GCHYSRSEKITENPEMNNQLLRLELFNILSILKEPNTQNAIREFLSERNWGITGAAAALL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH LTEGDEESIEVVLELLKDPCTKVRIQAALVLSIWSHEEDPIHVLQEEYLNSDRETKAKIL EECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH EGIGRIGSMKSIPFLIETLKEPSQTLRLIAAMALIQSLNN HHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLMLRSILLTFLVLYFLQIFGAEKEEIQRVVRRIEAHLHIQDTPSAYFEAKQAIASYSSS CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCC QSIHEVYIKATARSGYEKEMLCAWQNYFKQFPNQIENRELIEEMAWGVLGKAAQSHSLIT CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHLALLAAFFCKDTKGVEILFQGMQDSNYAIRAFAVKLSSHLHDDKLIKSVKELFRNEKV HHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH RLVKHEVIKAIGKMKILELKEELEFLISSEQSLSEEKALAIESLVALLNSLKREEVVRLI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSDRVGLRLVACQAIAHFQSQRDVDQLLILTNDYHPQVKMASYQAMGLLKSKEQNDSVIE HCCCCCHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCEEHHHHHHHHHHHCCCCCHHHHH AARKGIKDDHFKVALSAAWLLLLYHPNEAKEVFQCYLLSDKPEVRLTASAALALAGRAGI HHHCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCH DLASQFLENHQDPYIRLNLACGLVKQRCCLKQAAQVIKQVLLSQKDKFCEIECGIFKSIA HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH GCHYSRSEKITENPEMNNQLLRLELFNILSILKEPNTQNAIREFLSERNWGITGAAAALL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH LTEGDEESIEVVLELLKDPCTKVRIQAALVLSIWSHEEDPIHVLQEEYLNSDRETKAKIL EECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH EGIGRIGSMKSIPFLIETLKEPSQTLRLIAAMALIQSLNN HHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA